mfold version 3.0 : 1998-2004, Michael Zuker, Rensselaer Polytechnic Institute

Folding MDV-1 (-) RNA at 37° C. (3.0)


         10         20         30         40         50
 GGGGAACCCC CCUUCGGGGG UCACCUCGCG CAGCGGGCUG CGCGAAGGGG
         60         70         80         90        100
 CCACGCUGCG AAGCAGCGUG GCGGUUCUCG UGCGUUACCG AAACGCACGA
        110        120        130        140        150
 AGGUCGCGCC UCUUCACGAG GCGUCACCUG GGAGAGCGCG AAAGCGCUAG
        160        170        180        190        200
 CCCGUGACUC GUCACGGUCG AACUCCCGUA CGAGGUGCCC GCACCUCGUC
        210        220        230
 CCCCCUUCCG GGGGGUCCCC A
flower - Output - flower

- The energy dot plot for MDV-1 (-) RNA . (Definition)
File formats: Text , PostScript, gif

- Computed Structures:   New RNAML syntax,   (File Formats)

- Structure 1 : Initial dG = -145.3 kcal/mole, (Thermodynamic Details).
Different structure file formats: PostScript, gif, .ct file, XRNA ss.

- Structure 2 : Initial dG = -141.8 kcal/mole, (Thermodynamic Details).
Different structure file formats: PostScript, gif, .ct file, XRNA ss.

- Structure 3 : Initial dG = -140.8 kcal/mole, (Thermodynamic Details).
Different structure file formats: PostScript, gif, .ct file, XRNA ss.

- Structure 4 : Initial dG = -139.7 kcal/mole, (Thermodynamic Details).
Different structure file formats: PostScript, gif, .ct file, XRNA ss.

- Structure 5 : Initial dG = -139.5 kcal/mole, (Thermodynamic Details).
Different structure file formats: PostScript, gif, .ct file, XRNA ss.

- Structure 6 : Initial dG = -138.5 kcal/mole, (Thermodynamic Details).
Different structure file formats: PostScript, gif, .ct file, XRNA ss.

May 19, 2004. 10:47:58 EDT



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