Structural element | ![]() | Information |
---|---|---|
External loop | -1.70 | 1 ss bases & 1 closing helices. |
Stack | -3.30 | External closing pair is G 1-C 220 |
Stack | -3.30 | External closing pair is G 2-C 219 |
Stack | -3.30 | External closing pair is G 3-C 218 |
Stack | -2.40 | External closing pair is G 4-C 217 |
Helix | -12.30 | 5 base pairs. |
Bulge loop | 1.60 | External closing pair is A 5-U 216 |
Stack | -3.30 | External closing pair is C 7-G 215 |
Stack | -3.30 | External closing pair is C 8-G 214 |
Stack | -3.30 | External closing pair is C 9-G 213 |
Stack | -3.30 | External closing pair is C 10-G 212 |
Stack | -3.30 | External closing pair is C 11-G 211 |
Helix | -16.50 | 6 base pairs. |
Interior loop | 2.70 | External closing pair is C 12-G 210 |
Stack | -3.30 | External closing pair is G 16-C 205 |
Stack | -3.30 | External closing pair is G 17-C 204 |
Stack | -3.30 | External closing pair is G 18-C 203 |
Stack | -3.30 | External closing pair is G 19-C 202 |
Helix | -13.20 | 5 base pairs. |
Multi-loop | -1.20 | External closing pair is G 20-C 201 14 ss bases & 7 closing helices. |
Stack | -2.20 | External closing pair is A 180-U 199 |
Stack | -2.40 | External closing pair is C 181-G 198 |
Stack | -2.40 | External closing pair is G 182-C 197 |
Stack | -2.10 | External closing pair is A 183-U 196 |
Stack | -3.30 | External closing pair is G 184-C 195 |
Stack | -2.20 | External closing pair is G 185-C 194 |
Stack | -2.10 | External closing pair is U 186-A 193 |
Helix | -16.70 | 8 base pairs. |
Hairpin loop | 3.20 | Closing pair is G 187-C 192 |
Stack | -3.30 | External closing pair is G 130-C 177 |
Stack | -3.30 | External closing pair is G 131-C 176 |
Stack | -2.40 | External closing pair is G 132-C 175 |
Stack | -2.10 | External closing pair is A 133-U 174 |
Helix | -11.10 | 5 base pairs. |
Multi-loop | 0.90 | External closing pair is G 134-C 173 10 ss bases & 3 closing helices. |
Stack | -3.30 | External closing pair is C 152-G 167 |
Stack | -2.40 | External closing pair is C 153-G 166 |
Stack | -2.20 | External closing pair is G 154-C 165 |
Stack | -2.10 | External closing pair is U 155-A 164 |
Stack | -2.40 | External closing pair is G 156-C 163 |
Helix | -12.40 | 6 base pairs. |
Hairpin loop | 4.10 | Closing pair is A 157-U 162 |
Stack | -3.40 | External closing pair is G 136-C 147 |
Stack | -2.40 | External closing pair is C 137-G 146 |
Stack | -3.40 | External closing pair is G 138-C 145 |
Helix | -9.20 | 4 base pairs. |
Hairpin loop | 0.40 | Closing pair is C 139-G 144 |
Stack | -3.30 | External closing pair is G 102-C 128 |
Stack | -2.20 | External closing pair is G 103-C 127 |
Helix | -5.50 | 3 base pairs. |
Interior loop | 1.70 | External closing pair is U 104-A 126 |
Stack | -2.50 | External closing pair is G 106-U 124 |
Stack | -2.40 | External closing pair is C 107-G 123 |
Stack | -3.40 | External closing pair is G 108-C 122 |
Stack | -3.30 | External closing pair is C 109-G 121 |
Stack | -2.10 | External closing pair is C 110-G 120 |
Stack | -2.40 | External closing pair is U 111-A 119 |
Helix | -16.10 | 7 base pairs. |
Hairpin loop | 4.20 | Closing pair is C 112-G 118 |
Stack | -2.40 | External closing pair is U 78-A 100 |
Stack | -2.40 | External closing pair is C 79-G 99 |
Stack | -2.20 | External closing pair is G 80-C 98 |
Stack | -2.10 | External closing pair is U 81-A 97 |
Stack | -3.40 | External closing pair is G 82-C 96 |
Stack | -2.40 | External closing pair is C 83-G 95 |
Stack | -2.20 | External closing pair is G 84-C 94 |
Stack | -0.90 | External closing pair is U 85-A 93 |
Helix | -18.00 | 9 base pairs. |
Hairpin loop | 5.10 | Closing pair is U 86-A 92 |
Stack | -3.40 | External closing pair is G 50-C 72 |
Stack | -3.30 | External closing pair is C 51-G 71 |
Stack | -2.10 | External closing pair is C 52-G 70 |
Stack | -2.20 | External closing pair is A 53-U 69 |
Stack | -2.40 | External closing pair is C 54-G 68 |
Stack | -3.40 | External closing pair is G 55-C 67 |
Stack | -2.10 | External closing pair is C 56-G 66 |
Stack | -2.10 | External closing pair is U 57-A 65 |
Stack | -3.40 | External closing pair is G 58-C 64 |
Helix | -24.40 | 10 base pairs. |
Hairpin loop | 5.70 | Closing pair is C 59-G 63 |
Stack | -3.30 | External closing pair is C 24-G 48 |
Stack | -2.10 | External closing pair is C 25-G 47 |
Helix | -5.40 | 3 base pairs. |
Bulge loop | 1.40 | External closing pair is U 26-A 46 |
Stack | -2.40 | External closing pair is C 27-G 44 |
Stack | -3.40 | External closing pair is G 28-C 43 |
Stack | -2.40 | External closing pair is C 29-G 42 |
Stack | -3.40 | External closing pair is G 30-C 41 |
Stack | -2.10 | External closing pair is C 31-G 40 |
Stack | -2.10 | External closing pair is A 32-U 39 |
Helix | -15.80 | 7 base pairs. |
Hairpin loop | 3.20 | Closing pair is G 33-C 38 |
Structure 2
MDV-1 (-) RNA
Initial dG = -141.80
Structural element | ![]() | Information |
---|---|---|
External loop | -1.70 | 1 ss bases & 1 closing helices. |
Stack | -3.30 | External closing pair is G 1-C 220 |
Stack | -3.30 | External closing pair is G 2-C 219 |
Stack | -3.30 | External closing pair is G 3-C 218 |
Helix | -9.90 | 4 base pairs. |
Bulge loop | 1.40 | External closing pair is G 4-C 217 |
Stack | -2.20 | External closing pair is A 6-U 216 |
Stack | -3.30 | External closing pair is C 7-G 215 |
Stack | -3.30 | External closing pair is C 8-G 214 |
Stack | -3.30 | External closing pair is C 9-G 213 |
Stack | -3.30 | External closing pair is C 10-G 212 |
Stack | -3.30 | External closing pair is C 11-G 211 |
Helix | -18.70 | 7 base pairs. |
Interior loop | 2.70 | External closing pair is C 12-G 210 |
Stack | -3.30 | External closing pair is G 16-C 205 |
Stack | -3.30 | External closing pair is G 17-C 204 |
Stack | -3.30 | External closing pair is G 18-C 203 |
Stack | -3.30 | External closing pair is G 19-C 202 |
Helix | -13.20 | 5 base pairs. |
Multi-loop | 2.30 | External closing pair is G 20-C 201 9 ss bases & 4 closing helices. |
Stack | -2.20 | External closing pair is A 180-U 199 |
Stack | -2.40 | External closing pair is C 181-G 198 |
Stack | -2.40 | External closing pair is G 182-C 197 |
Stack | -2.10 | External closing pair is A 183-U 196 |
Stack | -3.30 | External closing pair is G 184-C 195 |
Stack | -2.20 | External closing pair is G 185-C 194 |
Stack | -2.10 | External closing pair is U 186-A 193 |
Helix | -16.70 | 8 base pairs. |
Hairpin loop | 3.20 | Closing pair is G 187-C 192 |
Stack | -3.30 | External closing pair is G 47-C 177 |
Stack | -3.30 | External closing pair is G 48-C 176 |
Helix | -6.60 | 3 base pairs. |
Multi-loop | 1.70 | External closing pair is G 49-C 175 2 ss bases & 3 closing helices. |
Stack | -2.20 | External closing pair is G 74-C 173 |
Stack | -0.90 | External closing pair is U 75-A 172 |
Stack | -2.40 | External closing pair is U 76-A 171 |
Helix | -5.50 | 4 base pairs. |
Multi-loop | 1.60 | External closing pair is C 77-G 170 6 ss bases & 5 closing helices. |
Stack | -2.20 | External closing pair is G 154-C 165 |
Stack | -2.10 | External closing pair is U 155-A 164 |
Stack | -2.40 | External closing pair is G 156-C 163 |
Helix | -6.70 | 4 base pairs. |
Hairpin loop | 4.10 | Closing pair is A 157-U 162 |
Stack | -3.30 | External closing pair is G 130-C 153 |
Stack | -3.30 | External closing pair is G 131-C 152 |
Helix | -6.60 | 3 base pairs. |
Interior loop | -0.30 | External closing pair is G 132-C 151 |
Stack | -2.10 | External closing pair is A 135-U 148 |
Stack | -3.40 | External closing pair is G 136-C 147 |
Stack | -2.40 | External closing pair is C 137-G 146 |
Stack | -3.40 | External closing pair is G 138-C 145 |
Helix | -11.30 | 5 base pairs. |
Hairpin loop | 0.40 | Closing pair is C 139-G 144 |
Stack | -2.10 | External closing pair is A 101-U 129 |
Stack | -3.30 | External closing pair is G 102-C 128 |
Stack | -2.20 | External closing pair is G 103-C 127 |
Helix | -7.60 | 4 base pairs. |
Interior loop | 1.70 | External closing pair is U 104-A 126 |
Stack | -2.50 | External closing pair is G 106-U 124 |
Stack | -2.40 | External closing pair is C 107-G 123 |
Stack | -3.40 | External closing pair is G 108-C 122 |
Stack | -3.30 | External closing pair is C 109-G 121 |
Stack | -2.10 | External closing pair is C 110-G 120 |
Stack | -2.40 | External closing pair is U 111-A 119 |
Helix | -16.10 | 7 base pairs. |
Hairpin loop | 4.20 | Closing pair is C 112-G 118 |
Stack | -2.40 | External closing pair is C 79-G 99 |
Stack | -2.20 | External closing pair is G 80-C 98 |
Stack | -2.10 | External closing pair is U 81-A 97 |
Stack | -3.40 | External closing pair is G 82-C 96 |
Stack | -2.40 | External closing pair is C 83-G 95 |
Stack | -2.20 | External closing pair is G 84-C 94 |
Stack | -0.90 | External closing pair is U 85-A 93 |
Helix | -15.60 | 8 base pairs. |
Hairpin loop | 5.10 | Closing pair is U 86-A 92 |
Stack | -3.40 | External closing pair is G 50-C 72 |
Stack | -3.30 | External closing pair is C 51-G 71 |
Stack | -2.10 | External closing pair is C 52-G 70 |
Stack | -2.20 | External closing pair is A 53-U 69 |
Stack | -2.40 | External closing pair is C 54-G 68 |
Stack | -3.40 | External closing pair is G 55-C 67 |
Stack | -2.10 | External closing pair is C 56-G 66 |
Stack | -2.10 | External closing pair is U 57-A 65 |
Stack | -3.40 | External closing pair is G 58-C 64 |
Helix | -24.40 | 10 base pairs. |
Hairpin loop | 5.70 | Closing pair is C 59-G 63 |
Stack | -2.40 | External closing pair is U 26-A 45 |
Stack | -2.40 | External closing pair is C 27-G 44 |
Stack | -3.40 | External closing pair is G 28-C 43 |
Stack | -2.40 | External closing pair is C 29-G 42 |
Stack | -3.40 | External closing pair is G 30-C 41 |
Stack | -2.10 | External closing pair is C 31-G 40 |
Stack | -2.10 | External closing pair is A 32-U 39 |
Helix | -18.20 | 8 base pairs. |
Hairpin loop | 3.20 | Closing pair is G 33-C 38 |
Structure 3
MDV-1 (-) RNA
Initial dG = -140.80
Structural element | ![]() | Information |
---|---|---|
External loop | -1.70 | 1 ss bases & 1 closing helices. |
Stack | -3.30 | External closing pair is G 1-C 220 |
Stack | -3.30 | External closing pair is G 2-C 219 |
Stack | -3.30 | External closing pair is G 3-C 218 |
Stack | -2.40 | External closing pair is G 4-C 217 |
Helix | -12.30 | 5 base pairs. |
Multi-loop | -0.70 | External closing pair is A 5-U 216 16 ss bases & 9 closing helices. |
Stack | -3.30 | External closing pair is C 200-G 215 |
Stack | -3.30 | External closing pair is C 201-G 214 |
Stack | -3.30 | External closing pair is C 202-G 213 |
Stack | -3.30 | External closing pair is C 203-G 212 |
Stack | -3.30 | External closing pair is C 204-G 211 |
Helix | -16.50 | 6 base pairs. |
Hairpin loop | 4.20 | Closing pair is C 205-G 210 |
Stack | -2.20 | External closing pair is A 180-U 199 |
Stack | -2.40 | External closing pair is C 181-G 198 |
Stack | -2.40 | External closing pair is G 182-C 197 |
Stack | -2.10 | External closing pair is A 183-U 196 |
Stack | -3.30 | External closing pair is G 184-C 195 |
Stack | -2.20 | External closing pair is G 185-C 194 |
Stack | -2.10 | External closing pair is U 186-A 193 |
Helix | -16.70 | 8 base pairs. |
Hairpin loop | 3.20 | Closing pair is G 187-C 192 |
Stack | -3.30 | External closing pair is G 130-C 177 |
Stack | -3.30 | External closing pair is G 131-C 176 |
Stack | -2.40 | External closing pair is G 132-C 175 |
Stack | -2.10 | External closing pair is A 133-U 174 |
Helix | -11.10 | 5 base pairs. |
Multi-loop | 0.90 | External closing pair is G 134-C 173 10 ss bases & 3 closing helices. |
Stack | -3.30 | External closing pair is C 152-G 167 |
Stack | -2.40 | External closing pair is C 153-G 166 |
Stack | -2.20 | External closing pair is G 154-C 165 |
Stack | -2.10 | External closing pair is U 155-A 164 |
Stack | -2.40 | External closing pair is G 156-C 163 |
Helix | -12.40 | 6 base pairs. |
Hairpin loop | 4.10 | Closing pair is A 157-U 162 |
Stack | -3.40 | External closing pair is G 136-C 147 |
Stack | -2.40 | External closing pair is C 137-G 146 |
Stack | -3.40 | External closing pair is G 138-C 145 |
Helix | -9.20 | 4 base pairs. |
Hairpin loop | 0.40 | Closing pair is C 139-G 144 |
Stack | -3.30 | External closing pair is G 102-C 128 |
Stack | -2.20 | External closing pair is G 103-C 127 |
Helix | -5.50 | 3 base pairs. |
Interior loop | 1.70 | External closing pair is U 104-A 126 |
Stack | -2.50 | External closing pair is G 106-U 124 |
Stack | -2.40 | External closing pair is C 107-G 123 |
Stack | -3.40 | External closing pair is G 108-C 122 |
Stack | -3.30 | External closing pair is C 109-G 121 |
Stack | -2.10 | External closing pair is C 110-G 120 |
Stack | -2.40 | External closing pair is U 111-A 119 |
Helix | -16.10 | 7 base pairs. |
Hairpin loop | 4.20 | Closing pair is C 112-G 118 |
Stack | -2.40 | External closing pair is U 78-A 100 |
Stack | -2.40 | External closing pair is C 79-G 99 |
Stack | -2.20 | External closing pair is G 80-C 98 |
Stack | -2.10 | External closing pair is U 81-A 97 |
Stack | -3.40 | External closing pair is G 82-C 96 |
Stack | -2.40 | External closing pair is C 83-G 95 |
Stack | -2.20 | External closing pair is G 84-C 94 |
Stack | -0.90 | External closing pair is U 85-A 93 |
Helix | -18.00 | 9 base pairs. |
Hairpin loop | 5.10 | Closing pair is U 86-A 92 |
Stack | -3.40 | External closing pair is G 50-C 72 |
Stack | -3.30 | External closing pair is C 51-G 71 |
Stack | -2.10 | External closing pair is C 52-G 70 |
Stack | -2.20 | External closing pair is A 53-U 69 |
Stack | -2.40 | External closing pair is C 54-G 68 |
Stack | -3.40 | External closing pair is G 55-C 67 |
Stack | -2.10 | External closing pair is C 56-G 66 |
Stack | -2.10 | External closing pair is U 57-A 65 |
Stack | -3.40 | External closing pair is G 58-C 64 |
Helix | -24.40 | 10 base pairs. |
Hairpin loop | 5.70 | Closing pair is C 59-G 63 |
Stack | -3.30 | External closing pair is C 24-G 48 |
Stack | -2.10 | External closing pair is C 25-G 47 |
Helix | -5.40 | 3 base pairs. |
Bulge loop | 1.40 | External closing pair is U 26-A 46 |
Stack | -2.40 | External closing pair is C 27-G 44 |
Stack | -3.40 | External closing pair is G 28-C 43 |
Stack | -2.40 | External closing pair is C 29-G 42 |
Stack | -3.40 | External closing pair is G 30-C 41 |
Stack | -2.10 | External closing pair is C 31-G 40 |
Stack | -2.10 | External closing pair is A 32-U 39 |
Helix | -15.80 | 7 base pairs. |
Hairpin loop | 3.20 | Closing pair is G 33-C 38 |
Stack | -3.30 | External closing pair is C 9-G 20 |
Stack | -3.30 | External closing pair is C 10-G 19 |
Stack | -3.30 | External closing pair is C 11-G 18 |
Helix | -9.90 | 4 base pairs. |
Hairpin loop | 0.80 | Closing pair is C 12-G 17 |
Structure 4
MDV-1 (-) RNA
Initial dG = -139.70
Structural element | ![]() | Information |
---|---|---|
External loop | -1.70 | 1 ss bases & 1 closing helices. |
Stack | -3.30 | External closing pair is G 1-C 220 |
Stack | -3.30 | External closing pair is G 2-C 219 |
Stack | -3.30 | External closing pair is G 3-C 218 |
Helix | -9.90 | 4 base pairs. |
Bulge loop | 1.40 | External closing pair is G 4-C 217 |
Stack | -2.20 | External closing pair is A 6-U 216 |
Stack | -3.30 | External closing pair is C 7-G 215 |
Stack | -3.30 | External closing pair is C 8-G 214 |
Stack | -3.30 | External closing pair is C 9-G 213 |
Stack | -3.30 | External closing pair is C 10-G 212 |
Stack | -3.30 | External closing pair is C 11-G 211 |
Helix | -18.70 | 7 base pairs. |
Multi-loop | 2.80 | External closing pair is C 12-G 210 13 ss bases & 3 closing helices. |
Stack | -2.20 | External closing pair is A 180-U 199 |
Stack | -2.40 | External closing pair is C 181-G 198 |
Stack | -2.40 | External closing pair is G 182-C 197 |
Stack | -2.10 | External closing pair is A 183-U 196 |
Stack | -3.30 | External closing pair is G 184-C 195 |
Stack | -2.20 | External closing pair is G 185-C 194 |
Stack | -2.10 | External closing pair is U 186-A 193 |
Helix | -16.70 | 8 base pairs. |
Hairpin loop | 3.20 | Closing pair is G 187-C 192 |
Stack | -2.40 | External closing pair is C 15-G 178 |
Stack | -3.30 | External closing pair is G 16-C 177 |
Stack | -3.30 | External closing pair is G 17-C 176 |
Stack | -1.50 | External closing pair is G 18-C 175 |
Stack | -2.10 | External closing pair is G 19-U 174 |
Stack | -2.20 | External closing pair is G 20-C 173 |
Helix | -14.80 | 7 base pairs. |
Multi-loop | -2.20 | External closing pair is U 21-A 172 14 ss bases & 7 closing helices. |
Stack | -2.40 | External closing pair is G 156-C 169 |
Stack | -2.20 | External closing pair is A 157-U 168 |
Stack | -2.10 | External closing pair is C 158-G 167 |
Helix | -6.70 | 4 base pairs. |
Hairpin loop | 5.30 | Closing pair is U 159-G 166 |
Stack | -3.30 | External closing pair is G 130-C 153 |
Stack | -3.30 | External closing pair is G 131-C 152 |
Helix | -6.60 | 3 base pairs. |
Interior loop | -0.30 | External closing pair is G 132-C 151 |
Stack | -2.10 | External closing pair is A 135-U 148 |
Stack | -3.40 | External closing pair is G 136-C 147 |
Stack | -2.40 | External closing pair is C 137-G 146 |
Stack | -3.40 | External closing pair is G 138-C 145 |
Helix | -11.30 | 5 base pairs. |
Hairpin loop | 0.40 | Closing pair is C 139-G 144 |
Stack | -3.30 | External closing pair is G 102-C 128 |
Stack | -2.20 | External closing pair is G 103-C 127 |
Helix | -5.50 | 3 base pairs. |
Interior loop | 1.70 | External closing pair is U 104-A 126 |
Stack | -2.50 | External closing pair is G 106-U 124 |
Stack | -2.40 | External closing pair is C 107-G 123 |
Stack | -3.40 | External closing pair is G 108-C 122 |
Stack | -3.30 | External closing pair is C 109-G 121 |
Stack | -2.10 | External closing pair is C 110-G 120 |
Stack | -2.40 | External closing pair is U 111-A 119 |
Helix | -16.10 | 7 base pairs. |
Hairpin loop | 4.20 | Closing pair is C 112-G 118 |
Stack | -2.40 | External closing pair is U 78-A 100 |
Stack | -2.40 | External closing pair is C 79-G 99 |
Stack | -2.20 | External closing pair is G 80-C 98 |
Stack | -2.10 | External closing pair is U 81-A 97 |
Stack | -3.40 | External closing pair is G 82-C 96 |
Stack | -2.40 | External closing pair is C 83-G 95 |
Stack | -2.20 | External closing pair is G 84-C 94 |
Stack | -0.90 | External closing pair is U 85-A 93 |
Helix | -18.00 | 9 base pairs. |
Hairpin loop | 5.10 | Closing pair is U 86-A 92 |
Stack | -3.40 | External closing pair is G 50-C 72 |
Stack | -3.30 | External closing pair is C 51-G 71 |
Stack | -2.10 | External closing pair is C 52-G 70 |
Stack | -2.20 | External closing pair is A 53-U 69 |
Stack | -2.40 | External closing pair is C 54-G 68 |
Stack | -3.40 | External closing pair is G 55-C 67 |
Stack | -2.10 | External closing pair is C 56-G 66 |
Stack | -2.10 | External closing pair is U 57-A 65 |
Stack | -3.40 | External closing pair is G 58-C 64 |
Helix | -24.40 | 10 base pairs. |
Hairpin loop | 5.70 | Closing pair is C 59-G 63 |
Stack | -3.30 | External closing pair is C 24-G 48 |
Stack | -2.10 | External closing pair is C 25-G 47 |
Helix | -5.40 | 3 base pairs. |
Bulge loop | 1.40 | External closing pair is U 26-A 46 |
Stack | -2.40 | External closing pair is C 27-G 44 |
Stack | -3.40 | External closing pair is G 28-C 43 |
Stack | -2.40 | External closing pair is C 29-G 42 |
Stack | -3.40 | External closing pair is G 30-C 41 |
Stack | -2.10 | External closing pair is C 31-G 40 |
Stack | -2.10 | External closing pair is A 32-U 39 |
Helix | -15.80 | 7 base pairs. |
Hairpin loop | 3.20 | Closing pair is G 33-C 38 |
Structure 5
MDV-1 (-) RNA
Initial dG = -139.50
Structural element | ![]() | Information |
---|---|---|
External loop | -1.70 | 1 ss bases & 1 closing helices. |
Stack | -3.30 | External closing pair is G 1-C 220 |
Stack | -3.30 | External closing pair is G 2-C 219 |
Stack | -3.30 | External closing pair is G 3-C 218 |
Helix | -9.90 | 4 base pairs. |
Bulge loop | 1.40 | External closing pair is G 4-C 217 |
Stack | -2.20 | External closing pair is A 6-U 216 |
Stack | -3.30 | External closing pair is C 7-G 215 |
Stack | -3.30 | External closing pair is C 8-G 214 |
Stack | -3.30 | External closing pair is C 9-G 213 |
Stack | -3.30 | External closing pair is C 10-G 212 |
Stack | -3.30 | External closing pair is C 11-G 211 |
Helix | -18.70 | 7 base pairs. |
Multi-loop | 2.70 | External closing pair is C 12-G 210 4 ss bases & 4 closing helices. |
Stack | -2.40 | External closing pair is G 44-C 208 |
Stack | -0.90 | External closing pair is A 45-U 207 |
Stack | -2.10 | External closing pair is A 46-U 206 |
Stack | -3.30 | External closing pair is G 47-C 205 |
Stack | -3.30 | External closing pair is G 48-C 204 |
Helix | -12.00 | 6 base pairs. |
Multi-loop | 0.70 | External closing pair is G 49-C 203 12 ss bases & 6 closing helices. |
Stack | -2.20 | External closing pair is A 180-U 199 |
Stack | -2.40 | External closing pair is C 181-G 198 |
Stack | -2.40 | External closing pair is G 182-C 197 |
Stack | -2.10 | External closing pair is A 183-U 196 |
Stack | -3.30 | External closing pair is G 184-C 195 |
Stack | -2.20 | External closing pair is G 185-C 194 |
Stack | -2.10 | External closing pair is U 186-A 193 |
Helix | -16.70 | 8 base pairs. |
Hairpin loop | 3.20 | Closing pair is G 187-C 192 |
Stack | -3.30 | External closing pair is G 130-C 177 |
Stack | -3.30 | External closing pair is G 131-C 176 |
Stack | -2.40 | External closing pair is G 132-C 175 |
Stack | -2.10 | External closing pair is A 133-U 174 |
Helix | -11.10 | 5 base pairs. |
Multi-loop | 0.90 | External closing pair is G 134-C 173 10 ss bases & 3 closing helices. |
Stack | -3.30 | External closing pair is C 152-G 167 |
Stack | -2.40 | External closing pair is C 153-G 166 |
Stack | -2.20 | External closing pair is G 154-C 165 |
Stack | -2.10 | External closing pair is U 155-A 164 |
Stack | -2.40 | External closing pair is G 156-C 163 |
Helix | -12.40 | 6 base pairs. |
Hairpin loop | 4.10 | Closing pair is A 157-U 162 |
Stack | -3.40 | External closing pair is G 136-C 147 |
Stack | -2.40 | External closing pair is C 137-G 146 |
Stack | -3.40 | External closing pair is G 138-C 145 |
Helix | -9.20 | 4 base pairs. |
Hairpin loop | 0.40 | Closing pair is C 139-G 144 |
Stack | -3.30 | External closing pair is G 102-C 128 |
Stack | -2.20 | External closing pair is G 103-C 127 |
Helix | -5.50 | 3 base pairs. |
Interior loop | 1.70 | External closing pair is U 104-A 126 |
Stack | -2.50 | External closing pair is G 106-U 124 |
Stack | -2.40 | External closing pair is C 107-G 123 |
Stack | -3.40 | External closing pair is G 108-C 122 |
Stack | -3.30 | External closing pair is C 109-G 121 |
Stack | -2.10 | External closing pair is C 110-G 120 |
Stack | -2.40 | External closing pair is U 111-A 119 |
Helix | -16.10 | 7 base pairs. |
Hairpin loop | 4.20 | Closing pair is C 112-G 118 |
Stack | -2.40 | External closing pair is U 78-A 100 |
Stack | -2.40 | External closing pair is C 79-G 99 |
Stack | -2.20 | External closing pair is G 80-C 98 |
Stack | -2.10 | External closing pair is U 81-A 97 |
Stack | -3.40 | External closing pair is G 82-C 96 |
Stack | -2.40 | External closing pair is C 83-G 95 |
Stack | -2.20 | External closing pair is G 84-C 94 |
Stack | -0.90 | External closing pair is U 85-A 93 |
Helix | -18.00 | 9 base pairs. |
Hairpin loop | 5.10 | Closing pair is U 86-A 92 |
Stack | -3.40 | External closing pair is G 50-C 72 |
Stack | -3.30 | External closing pair is C 51-G 71 |
Stack | -2.10 | External closing pair is C 52-G 70 |
Stack | -2.20 | External closing pair is A 53-U 69 |
Stack | -2.40 | External closing pair is C 54-G 68 |
Stack | -3.40 | External closing pair is G 55-C 67 |
Stack | -2.10 | External closing pair is C 56-G 66 |
Stack | -2.10 | External closing pair is U 57-A 65 |
Stack | -3.40 | External closing pair is G 58-C 64 |
Helix | -24.40 | 10 base pairs. |
Hairpin loop | 5.70 | Closing pair is C 59-G 63 |
Stack | -3.40 | External closing pair is G 28-C 43 |
Stack | -2.40 | External closing pair is C 29-G 42 |
Stack | -3.40 | External closing pair is G 30-C 41 |
Stack | -2.10 | External closing pair is C 31-G 40 |
Stack | -2.10 | External closing pair is A 32-U 39 |
Helix | -13.40 | 6 base pairs. |
Hairpin loop | 3.20 | Closing pair is G 33-C 38 |
Stack | -1.50 | External closing pair is G 16-C 27 |
Stack | -2.10 | External closing pair is G 17-U 26 |
Stack | -3.30 | External closing pair is G 18-C 25 |
Helix | -6.90 | 4 base pairs. |
Hairpin loop | 3.20 | Closing pair is G 19-C 24 |
Structure 6
MDV-1 (-) RNA
Initial dG = -138.50
Structural element | ![]() | Information |
---|---|---|
External loop | -1.70 | 1 ss bases & 1 closing helices. |
Stack | -3.30 | External closing pair is G 1-C 220 |
Stack | -3.30 | External closing pair is G 2-C 219 |
Stack | -3.30 | External closing pair is G 3-C 218 |
Helix | -9.90 | 4 base pairs. |
Bulge loop | 1.40 | External closing pair is G 4-C 217 |
Stack | -2.20 | External closing pair is A 6-U 216 |
Stack | -3.30 | External closing pair is C 7-G 215 |
Stack | -3.30 | External closing pair is C 8-G 214 |
Stack | -3.30 | External closing pair is C 9-G 213 |
Stack | -3.30 | External closing pair is C 10-G 212 |
Stack | -3.30 | External closing pair is C 11-G 211 |
Helix | -18.70 | 7 base pairs. |
Interior loop | 2.70 | External closing pair is C 12-G 210 |
Stack | -3.30 | External closing pair is G 16-C 205 |
Stack | -3.30 | External closing pair is G 17-C 204 |
Stack | -3.30 | External closing pair is G 18-C 203 |
Stack | -3.30 | External closing pair is G 19-C 202 |
Helix | -13.20 | 5 base pairs. |
Multi-loop | 0.90 | External closing pair is G 20-C 201 11 ss bases & 6 closing helices. |
Stack | -2.20 | External closing pair is A 180-U 199 |
Stack | -2.40 | External closing pair is C 181-G 198 |
Stack | -2.40 | External closing pair is G 182-C 197 |
Stack | -2.10 | External closing pair is A 183-U 196 |
Stack | -3.30 | External closing pair is G 184-C 195 |
Stack | -2.20 | External closing pair is G 185-C 194 |
Stack | -2.10 | External closing pair is U 186-A 193 |
Helix | -16.70 | 8 base pairs. |
Hairpin loop | 3.20 | Closing pair is G 187-C 192 |
Stack | -2.20 | External closing pair is A 164-U 179 |
Stack | -2.40 | External closing pair is C 165-G 178 |
Stack | -3.30 | External closing pair is G 166-C 177 |
Helix | -7.90 | 4 base pairs. |
Hairpin loop | 4.60 | Closing pair is G 167-C 176 |
Stack | -2.20 | External closing pair is G 74-C 158 |
Stack | -1.30 | External closing pair is U 75-A 157 |
Helix | -3.50 | 3 base pairs. |
Multi-loop | 2.00 | External closing pair is U 76-G 156 5 ss bases & 4 closing helices. |
Stack | -3.30 | External closing pair is G 130-C 153 |
Stack | -3.30 | External closing pair is G 131-C 152 |
Helix | -6.60 | 3 base pairs. |
Interior loop | -0.30 | External closing pair is G 132-C 151 |
Stack | -2.10 | External closing pair is A 135-U 148 |
Stack | -3.40 | External closing pair is G 136-C 147 |
Stack | -2.40 | External closing pair is C 137-G 146 |
Stack | -3.40 | External closing pair is G 138-C 145 |
Helix | -11.30 | 5 base pairs. |
Hairpin loop | 0.40 | Closing pair is C 139-G 144 |
Stack | -3.30 | External closing pair is G 102-C 128 |
Stack | -2.20 | External closing pair is G 103-C 127 |
Helix | -5.50 | 3 base pairs. |
Interior loop | 1.70 | External closing pair is U 104-A 126 |
Stack | -2.50 | External closing pair is G 106-U 124 |
Stack | -2.40 | External closing pair is C 107-G 123 |
Stack | -3.40 | External closing pair is G 108-C 122 |
Stack | -3.30 | External closing pair is C 109-G 121 |
Stack | -2.10 | External closing pair is C 110-G 120 |
Stack | -2.40 | External closing pair is U 111-A 119 |
Helix | -16.10 | 7 base pairs. |
Hairpin loop | 4.20 | Closing pair is C 112-G 118 |
Stack | -2.40 | External closing pair is U 78-A 100 |
Stack | -2.40 | External closing pair is C 79-G 99 |
Stack | -2.20 | External closing pair is G 80-C 98 |
Stack | -2.10 | External closing pair is U 81-A 97 |
Stack | -3.40 | External closing pair is G 82-C 96 |
Stack | -2.40 | External closing pair is C 83-G 95 |
Stack | -2.20 | External closing pair is G 84-C 94 |
Stack | -0.90 | External closing pair is U 85-A 93 |
Helix | -18.00 | 9 base pairs. |
Hairpin loop | 5.10 | Closing pair is U 86-A 92 |
Stack | -3.40 | External closing pair is G 50-C 72 |
Stack | -3.30 | External closing pair is C 51-G 71 |
Stack | -2.10 | External closing pair is C 52-G 70 |
Stack | -2.20 | External closing pair is A 53-U 69 |
Stack | -2.40 | External closing pair is C 54-G 68 |
Stack | -3.40 | External closing pair is G 55-C 67 |
Stack | -2.10 | External closing pair is C 56-G 66 |
Stack | -2.10 | External closing pair is U 57-A 65 |
Stack | -3.40 | External closing pair is G 58-C 64 |
Helix | -24.40 | 10 base pairs. |
Hairpin loop | 5.70 | Closing pair is C 59-G 63 |
Stack | -3.30 | External closing pair is C 24-G 48 |
Stack | -2.10 | External closing pair is C 25-G 47 |
Helix | -5.40 | 3 base pairs. |
Bulge loop | 1.40 | External closing pair is U 26-A 46 |
Stack | -2.40 | External closing pair is C 27-G 44 |
Stack | -3.40 | External closing pair is G 28-C 43 |
Stack | -2.40 | External closing pair is C 29-G 42 |
Stack | -3.40 | External closing pair is G 30-C 41 |
Stack | -2.10 | External closing pair is C 31-G 40 |
Stack | -2.10 | External closing pair is A 32-U 39 |
Helix | -15.80 | 7 base pairs. |
Hairpin loop | 3.20 | Closing pair is G 33-C 38 |