UNAFold

Hi Julie,

Can you post a ct file that shows this problem? I tried a few I had lying around, but none generated a SEGV even with the exact command line you used.

Thanks,
Nick

First, I want like to clarify that mfold and UNAFold both require licenses for commercial use. However, it does appear to be true that mfold is freely available for non-commercial use while UNAFold is not. (The "processing fee" associated with an academic license for UNAFold it not intende...

The Quikfold server at http://www.unafold.org/Dinamelt/applications/quickfold.php is powered by UNAFold rather than mfold, and we generally steer new users to UNAFold for a handful of reasons. However, I know it is possible to generate this kind of output from mfold, because Quikfold was powered by ...

Argh! I'm sorry they've ignored you. I responded to your email in hopes of getting RPI's attention. If this doesn't pan out soon, I'll explore some other ways of contacting someone at RPI. It occurs to me that it's probably between semesters now at RPI. There's a tiny chance we won't be able to get ...

Thank you for your patience and for helping me work this out! Now that we know what changes are necessary, I've updated http://www.unafold.org/Dinamelt/software/oligoarrayaux.php to have a source download for 3.8.1. For anyone interested in building OAA on an ARM Mac, now or in the future, version 3...

Hmm, maybe my C89-compatibility idea was half-baked. :( I'm baffled at those error messages from clang. Going back to getting the build to work "naturally", I think the next step would be to edit energy.h and change line 19 to "# define isFinite(x) isfinite(x)", i.e. add "is...

Sorry, I should have been clear that it isn't the same line numbers in hybrid-min.c. The equal() function appears at line 2195, so it's lines 2200–2211 to delete. I didn't know what conda was until I Googled it just now. I don't really understand it; I don't think it has any relevance here, but I co...

Based on the "1 error generated" and the fact that "make install" tries to do the build again, I'm guessing your build didn't succeed. :( This seems to be another error caused by the compiler treating the code as C99 instead of C89. I don't see any setting for language standard i...

OK, time for plan B. If you're up for adding a line to the source code, open src/energy.c and add this line right above the lines starting with const: void readOrDie(unsigned int num, const char* name, FILE* file, const char* format, ...); That eliminated the warnings for me, so hopefully it will el...

Hi Fabian, First, a few generalities. I don't have access to a Mac to test this myself. I know that UNAFold 4 compiles on a Mac, but I'm not sure if we ever tried UNAFold or OAA 3.8 on a Mac. (If we did, it was probably ten years ago so the results wouldn't necessarily match a modern OS/compiler any...