Magnification of the structure dot plot - 1

  

Figure 12: The default structure dot plot has been magnified by a factor of 20 about (152,170), shown in blue. The multicolor option has been chosen. By eye, one can see that an orange-yellow base pair is in foldings 1 and 3. A yellow-orange-red base pair is in foldings 1,3 and 4. The green-blue-brown base pairs are in foldings 2, 5 and 6. The chosen base pair was not in a folding because it is too difficult to hit on a base pair at the resolution in the default dot plot for this case.