Search found 26 matches
- Mon May 15, 2023 11:18 pm
- Forum: mfold
- Topic: Segmentation fault issue when plotting with sir_graph_ng
- Replies: 6
- Views: 51965
Re: Segmentation fault issue when plotting with sir_graph_ng
This is puzzling. I should be clear that I am not the author of mfold_util, but I'm fairly confident there are no limitations like what you described. I wonder if you can download this binary: http://www.unafold.org/for-julie/sir_graph_ng and try it in place of the one you have. It's statically link...
- Mon May 15, 2023 11:10 pm
- Forum: UNAFold
- Topic: type of DNA Sequence
- Replies: 1
- Views: 26188
Re: type of DNA Sequence
The fact that you've written them all with 5' at one end and 3' at the other suggests to me that they're linear. However, they're your sequences, not mine
so only you know for sure!

- Thu May 11, 2023 8:39 pm
- Forum: mfold
- Topic: Segmentation fault issue when plotting with sir_graph_ng
- Replies: 6
- Views: 51965
Re: Segmentation fault issue when plotting with sir_graph_ng
This is odd. I tried that file and it worked for me.
Can you tell me what version of UNAFold you have, and how you installed it?
Can you tell me what version of UNAFold you have, and how you installed it?
- Wed May 10, 2023 8:06 pm
- Forum: mfold
- Topic: Segmentation fault issue when plotting with sir_graph_ng
- Replies: 6
- Views: 51965
Re: Segmentation fault issue when plotting with sir_graph_ng
Hi Julie,
Can you post a ct file that shows this problem? I tried a few I had lying around, but none generated a SEGV even with the exact command line you used.
Thanks,
Nick
Can you post a ct file that shows this problem? I tried a few I had lying around, but none generated a SEGV even with the exact command line you used.
Thanks,
Nick
- Thu Feb 16, 2023 3:27 pm
- Forum: UNAFold
- Topic: UNAFold vs. mfold
- Replies: 1
- Views: 27921
Re: UNAFold vs. mfold
First, I want like to clarify that mfold and UNAFold both require licenses for commercial use. However, it does appear to be true that mfold is freely available for non-commercial use while UNAFold is not. (The "processing fee" associated with an academic license for UNAFold it not intende...
- Mon Jan 30, 2023 7:47 pm
- Forum: mfold
- Topic: mfold -predition with folding temp from dinamelt
- Replies: 2
- Views: 30965
Re: mfold -predition with folding temp from dinamelt
The Quikfold server at http://www.unafold.org/Dinamelt/applications/quickfold.php is powered by UNAFold rather than mfold, and we generally steer new users to UNAFold for a handful of reasons. However, I know it is possible to generate this kind of output from mfold, because Quikfold was powered by ...
- Tue Dec 20, 2022 9:36 pm
- Forum: UNAFold
- Topic: UnaFold avaibility? Or lack there of
- Replies: 4
- Views: 40620
Re: UnaFold avaibility? Or lack there of
Argh! I'm sorry they've ignored you. I responded to your email in hopes of getting RPI's attention. If this doesn't pan out soon, I'll explore some other ways of contacting someone at RPI. It occurs to me that it's probably between semesters now at RPI. There's a tiny chance we won't be able to get ...
- Wed Nov 30, 2022 5:11 pm
- Forum: UNAFold
- Topic: OligoArrayAux v3.8 compilation fail
- Replies: 13
- Views: 102672
Re: OligoArrayAux v3.8 compilation fail
Thank you for your patience and for helping me work this out! Now that we know what changes are necessary, I've updated http://www.unafold.org/Dinamelt/software/oligoarrayaux.php to have a source download for 3.8.1. For anyone interested in building OAA on an ARM Mac, now or in the future, version 3...
- Fri Nov 25, 2022 5:13 pm
- Forum: UNAFold
- Topic: OligoArrayAux v3.8 compilation fail
- Replies: 13
- Views: 102672
Re: OligoArrayAux v3.8 compilation fail
Hmm, maybe my C89-compatibility idea was half-baked. :( I'm baffled at those error messages from clang. Going back to getting the build to work "naturally", I think the next step would be to edit energy.h and change line 19 to "# define isFinite(x) isfinite(x)", i.e. add "is...
- Thu Nov 24, 2022 12:59 am
- Forum: UNAFold
- Topic: OligoArrayAux v3.8 compilation fail
- Replies: 13
- Views: 102672
Re: OligoArrayAux v3.8 compilation fail
Sorry, I should have been clear that it isn't the same line numbers in hybrid-min.c. The equal() function appears at line 2195, so it's lines 2200–2211 to delete. I didn't know what conda was until I Googled it just now. I don't really understand it; I don't think it has any relevance here, but I co...