Producing structures similar to mfold webserver using mfold 3.6 on command line

[mohitharikatla]

I have been trying to produce images that are similar to the mfold web server results on my mac using mfold 3.6. The images I’m producing now are linked here: https://drive.google.com/drive/folders/ ... drive_link

How do I run mfold 3.6 to produce images as seen on "webserver_mfold" than the ones on "Command_Line_mfold"?

Although the dG values predicted are the same I would still prefer having images of 2D structures in the format observed on the web server.

I am simply running the default settings for mfold as such:

Code: Select all

$ mfold SEQ="Path/to/fasta"