Thermodynamics of Folding

Structure 1
26Apr20-05-33-57
ΔG = -40.20

Structural elementδGInformation
External loop -2.10 10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 49-U 117
Stack -2.40External closing pair is U 50-A 116
Stack -2.10External closing pair is C 51-G 115
Helix -5.60 4 base pairs.
Interior loop 4.10External closing pair is U 52-A 114
Stack -2.10External closing pair is A 56-U 112
Stack -3.40External closing pair is G 57-C 111
Stack -2.10External closing pair is C 58-G 110
Stack -2.10External closing pair is A 59-U 109
Stack -2.50External closing pair is G 60-C 108
Helix -12.20 6 base pairs.
Bulge loop 4.10External closing pair is U 61-G 107
Stack -3.40External closing pair is G 66-C 106
Helix -3.40 2 base pairs.
Interior loop 0.40External closing pair is C 67-G 105
Stack -2.10External closing pair is C 69-G 103
Stack -1.10External closing pair is A 70-U 102
Stack -2.10External closing pair is U 71-A 101
Helix -5.30 4 base pairs.
Interior loop 1.10External closing pair is G 72-C 100
Stack -3.30External closing pair is G 75-C 97
Helix -3.30 2 base pairs.
Interior loop 0.30External closing pair is G 76-C 96
Stack -3.30External closing pair is G 78-C 94
Stack -2.50External closing pair is G 79-C 93
Helix -5.80 3 base pairs.
Interior loop 1.10External closing pair is U 80-G 92
Stack -2.50External closing pair is G 82-C 90
Stack -1.40External closing pair is U 83-G 89
Helix -3.90 3 base pairs.
Hairpin loop 5.70Closing pair is G 84-C 88
Stack -3.40External closing pair is G 21-C 47
Stack -3.30External closing pair is C 22-G 46
Helix -6.70 3 base pairs.
Bulge loop 0.50External closing pair is C 23-G 45
Stack -2.40External closing pair is C 24-G 43
Stack -3.30External closing pair is G 25-C 42
Stack -3.40External closing pair is G 26-C 41
Helix -9.10 4 base pairs.
Bulge loop 3.60External closing pair is C 27-G 40
Stack -3.40External closing pair is G 32-C 39
Helix -3.40 2 base pairs.
Hairpin loop 3.60Closing pair is C 33-G 38
Stack -3.30External closing pair is G 2-C 18
Stack -3.30External closing pair is G 3-C 17
Stack -2.20External closing pair is G 4-C 16
Helix -8.80 4 base pairs.
Bulge loop 2.90External closing pair is U 5-A 15
Stack -2.10External closing pair is U 6-A 13
Helix -2.10 2 base pairs.
Hairpin loop 4.10Closing pair is G 7-C 12