Thermodynamics of Folding

Structure 2
26Mar01-00-04-00
ΔG = -70.50

Structural elementδGInformation
External loop -0.20 8 ss bases & 2 closing helices.
Stack -1.10External closing pair is A 116-U 215
Stack -1.30External closing pair is U 117-A 214
Stack -0.90External closing pair is A 118-U 213
Helix -3.30 4 base pairs.
Interior loop -0.40External closing pair is A 119-U 212
Stack -1.30External closing pair is U 121-A 210
Stack -1.10External closing pair is A 122-U 209
Stack -2.40External closing pair is U 123-A 208
Stack -2.10External closing pair is C 124-G 207
Stack -0.90External closing pair is U 125-A 206
Helix -7.80 6 base pairs.
Interior loop 3.00External closing pair is U 126-A 205
Stack -2.10External closing pair is A 129-U 201
Helix -2.10 2 base pairs.
Bulge loop 1.40External closing pair is G 130-C 200
Stack -0.90External closing pair is A 132-U 199
Stack -2.10External closing pair is A 133-U 198
Stack -2.40External closing pair is G 134-C 197
Stack -0.60External closing pair is A 135-U 196
Stack -2.10External closing pair is G 136-U 195
Helix -8.10 6 base pairs.
Interior loop -1.00External closing pair is G 137-C 194
Stack -0.90External closing pair is A 139-U 192
Stack -1.40External closing pair is A 140-U 191
Stack -1.00External closing pair is U 141-G 190
Stack -0.60External closing pair is A 142-U 189
Stack -2.10External closing pair is G 143-U 188
Helix -6.00 6 base pairs.
Interior loop -4.40External closing pair is G 144-C 187
Interior loop 1.10External closing pair is G 147-C 184
Stack -0.90External closing pair is A 149-U 182
Stack -0.90External closing pair is A 150-U 181
Stack -0.90External closing pair is A 151-U 180
Stack -0.90External closing pair is A 152-U 179
Stack -0.90External closing pair is A 153-U 178
Helix -4.50 6 base pairs.
Interior loop 1.70External closing pair is A 154-U 177
Stack -0.90External closing pair is A 156-U 175
Stack -0.90External closing pair is A 157-U 174
Stack -2.10External closing pair is A 158-U 173
Stack -2.40External closing pair is G 159-C 172
Stack -0.60External closing pair is A 160-U 171
Stack -1.30External closing pair is G 161-U 170
Stack -1.40External closing pair is A 162-U 169
Helix -9.60 8 base pairs.
Hairpin loop 5.00Closing pair is U 163-G 168
Stack -2.10External closing pair is U 1-A 109
Stack -3.30External closing pair is G 2-C 108
Helix -5.40 3 base pairs.
Multi-loop 3.80External closing pair is G 3-C 107
5 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 59-U 104
Stack -2.10External closing pair is C 60-G 103
Stack -2.10External closing pair is A 61-U 102
Stack -3.40External closing pair is G 62-C 101
Helix -10.10 5 base pairs.
Interior loop 1.10External closing pair is C 63-G 100
Stack -2.40External closing pair is G 65-C 98
Stack -0.60External closing pair is A 66-U 97
Stack -1.30External closing pair is G 67-U 96
Helix -4.30 4 base pairs.
Interior loop 0.90External closing pair is A 68-U 95
Stack -3.30External closing pair is C 71-G 92
Helix -3.30 2 base pairs.
Interior loop 0.40External closing pair is C 72-G 91
Stack -2.40External closing pair is G 74-C 89
Stack -0.90External closing pair is A 75-U 88
Stack -0.90External closing pair is A 76-U 87
Stack -0.90External closing pair is A 77-U 86
Stack -0.90External closing pair is A 78-U 85
Helix -6.00 6 base pairs.
Hairpin loop 3.00Closing pair is A 79-U 84
Stack -2.40External closing pair is C 7-G 58
Stack -3.30External closing pair is G 8-C 57
Stack -2.40External closing pair is G 9-C 56
Helix -8.10 4 base pairs.
Multi-loop 1.90External closing pair is A 10-U 55
7 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 34-C 51
Stack -2.10External closing pair is C 35-G 50
Stack -1.30External closing pair is U 36-A 49
Stack -0.60External closing pair is U 37-G 48
Stack -1.30External closing pair is U 38-A 47
Stack -0.60External closing pair is U 39-G 46
Helix -9.30 7 base pairs.
Hairpin loop 4.40Closing pair is U 40-A 45
Stack -1.00External closing pair is U 12-A 30
Stack -2.50External closing pair is G 13-U 29
Stack -1.40External closing pair is C 14-G 28
Stack -2.50External closing pair is G 15-U 27
Stack -2.10External closing pair is C 16-G 26
Helix -9.50 6 base pairs.
Hairpin loop 5.20Closing pair is U 17-A 25