Thermodynamics of Folding

Structure 22
26Apr20-05-56-12
ΔG = -162.70

Structural elementδGInformation
External loop -0.60 3 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 396-U 568
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 397-A 567
Stack -1.40External closing pair is A 399-U 565
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 400-G 564
Stack -1.40External closing pair is G 402-U 562
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 403-A 561
Stack -1.40External closing pair is A 405-U 559
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 406-G 558
Stack -1.40External closing pair is G 408-U 556
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 409-A 555
Stack -1.40External closing pair is A 411-U 553
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 412-G 552
Stack -1.40External closing pair is G 414-U 550
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 415-A 549
Stack -1.40External closing pair is A 417-U 547
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 418-G 546
Stack -1.40External closing pair is G 420-U 544
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 421-A 543
Stack -1.40External closing pair is A 423-U 541
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 424-G 540
Stack -1.40External closing pair is G 426-U 538
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 427-A 537
Stack -1.40External closing pair is A 429-U 535
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 430-G 534
Stack -1.40External closing pair is G 432-U 532
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 433-A 531
Stack -1.40External closing pair is A 435-U 529
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 436-G 528
Stack -1.40External closing pair is G 438-U 526
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 439-A 525
Stack -1.40External closing pair is A 441-U 523
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 442-G 522
Stack -1.40External closing pair is G 444-U 520
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 445-A 519
Stack -1.40External closing pair is A 447-U 517
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 448-G 516
Stack -1.40External closing pair is G 450-U 514
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 451-A 513
Stack -1.40External closing pair is A 453-U 511
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 454-G 510
Stack -1.40External closing pair is G 456-U 508
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 457-A 507
Stack -1.40External closing pair is A 459-U 505
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 460-G 504
Stack -1.40External closing pair is G 462-U 502
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 463-A 501
Stack -1.40External closing pair is A 465-U 499
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 466-G 498
Stack -1.40External closing pair is G 468-U 496
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 469-A 495
Stack -1.40External closing pair is A 471-U 493
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 472-G 492
Stack -1.40External closing pair is G 474-U 490
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 475-A 489
Stack -1.40External closing pair is A 477-U 487
Helix -1.40 2 base pairs.
Hairpin loop 5.60Closing pair is U 478-G 486
Stack -1.40External closing pair is G 346-U 394
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 347-A 393
Stack -1.40External closing pair is A 349-U 391
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 350-G 390
Stack -1.40External closing pair is G 352-U 388
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 353-A 387
Stack -1.10External closing pair is A 355-U 385
Helix -1.10 2 base pairs.
Interior loop 2.30External closing pair is U 356-A 384
Stack -2.50External closing pair is G 359-U 382
Helix -2.50 2 base pairs.
Interior loop 1.10External closing pair is C 360-G 381
Stack -1.40External closing pair is G 362-U 379
Stack -2.40External closing pair is U 363-A 378
Stack -1.40External closing pair is C 364-G 377
Helix -5.20 4 base pairs.
Interior loop -0.40External closing pair is G 365-U 376
Hairpin loop 4.70Closing pair is U 367-G 374
Stack -1.10External closing pair is A 1-U 344
Stack -2.10External closing pair is U 2-A 343
Stack -3.30External closing pair is G 3-C 342
Stack -2.40External closing pair is G 4-C 341
Stack -2.10External closing pair is A 5-U 340
Helix -11.00 6 base pairs.
Bulge loop 2.80External closing pair is G 6-C 339
Stack -3.40External closing pair is G 9-C 338
Stack -3.30External closing pair is C 10-G 337
Helix -6.70 3 base pairs.
Bulge loop 1.40External closing pair is C 11-G 336
Stack -3.40External closing pair is G 12-C 334
Helix -3.40 2 base pairs.
Multi-loop 2.00External closing pair is C 13-G 333
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is U 233-A 326
Stack -2.40External closing pair is G 234-C 325
Stack -2.10External closing pair is A 235-U 324
Stack -3.30External closing pair is G 236-C 323
Helix -9.90 5 base pairs.
Multi-loop 1.40External closing pair is G 237-C 322
14 ss bases & 4 closing helices.
Stack -2.10External closing pair is C 300-G 312
Stack -2.10External closing pair is A 301-U 311
Stack -3.30External closing pair is G 302-C 310
Helix -7.50 4 base pairs.
Hairpin loop 4.50Closing pair is G 303-C 309
Stack -3.40External closing pair is G 264-C 296
Stack -2.10External closing pair is C 265-G 295
Stack -2.10External closing pair is A 266-U 294
Stack -3.30External closing pair is G 267-C 293
Helix -10.90 5 base pairs.
Interior loop 1.20External closing pair is G 268-C 292
Stack -2.20External closing pair is A 270-U 289
Helix -2.20 2 base pairs.
Interior loop 0.60External closing pair is C 271-G 288
Stack -0.60External closing pair is U 274-G 285
Stack -1.30External closing pair is U 275-A 284
Stack -2.20External closing pair is A 276-U 283
Helix -4.10 4 base pairs.
Hairpin loop 3.80Closing pair is C 277-G 282
Stack -2.10External closing pair is U 239-A 262
Stack -3.30External closing pair is G 240-C 261
Stack -3.30External closing pair is G 241-C 260
Stack -3.40External closing pair is G 242-C 259
Helix -12.10 5 base pairs.
Bulge loop 3.60External closing pair is C 243-G 258
Stack -3.30External closing pair is G 248-C 257
Stack -2.50External closing pair is G 249-C 256
Helix -5.80 3 base pairs.
Hairpin loop 4.80Closing pair is U 250-G 255
Stack -1.40External closing pair is G 15-U 230
Stack -2.40External closing pair is U 16-A 229
Stack -2.10External closing pair is C 17-G 228
Helix -5.90 4 base pairs.
Interior loop 0.90External closing pair is A 18-U 227
Stack -3.30External closing pair is C 22-G 223
Stack -2.10External closing pair is C 23-G 222
Helix -5.40 3 base pairs.
Interior loop 4.40External closing pair is U 24-A 221
Stack -2.40External closing pair is C 27-G 215
Helix -2.40 2 base pairs.
Interior loop 0.30External closing pair is G 28-C 214
Stack -2.40External closing pair is G 31-C 211
Stack -2.10External closing pair is A 32-U 210
Stack -3.40External closing pair is G 33-C 209
Helix -7.90 4 base pairs.
Interior loop 1.20External closing pair is C 34-G 208
Stack -3.30External closing pair is C 37-G 205
Stack -2.10External closing pair is C 38-G 204
Stack -2.40External closing pair is U 39-A 203
Stack -2.10External closing pair is C 40-G 202
Stack -2.10External closing pair is U 41-A 201
Helix -12.00 6 base pairs.
Multi-loop 2.10External closing pair is G 42-C 200
9 ss bases & 3 closing helices.
Stack -1.40External closing pair is C 90-G 198
Stack -1.40External closing pair is G 91-U 197
Stack -0.90External closing pair is U 92-A 196
Stack -2.40External closing pair is U 93-A 195
Stack -2.10External closing pair is C 94-G 194
Stack -2.10External closing pair is U 95-A 193
Helix -10.30 7 base pairs.
Multi-loop 1.90External closing pair is G 96-C 192
13 ss bases & 4 closing helices.
Stack -0.90External closing pair is U 160-A 186
Stack -2.40External closing pair is U 161-A 185
Stack -2.10External closing pair is C 162-G 184
Helix -5.40 4 base pairs.
Bulge loop 1.60External closing pair is A 163-U 183
Stack -2.10External closing pair is C 164-G 181
Stack -2.10External closing pair is U 165-A 180
Helix -4.20 3 base pairs.
Bulge loop 2.80External closing pair is G 166-C 179
Stack -2.40External closing pair is G 169-C 178
Stack -2.20External closing pair is A 170-U 177
Helix -4.60 3 base pairs.
Hairpin loop 2.70Closing pair is C 171-G 176
Stack -2.10External closing pair is U 123-A 155
Helix -2.10 2 base pairs.
Bulge loop 1.60External closing pair is G 124-C 154
Stack -0.90External closing pair is U 126-A 153
Helix -0.90 2 base pairs.
Interior loop -2.90External closing pair is U 127-A 152
Stack -1.10External closing pair is A 130-U 149
Stack -1.00External closing pair is U 131-A 148
Helix -2.10 3 base pairs.
Interior loop 1.70External closing pair is G 132-U 147
Stack -1.40External closing pair is U 134-G 145
Stack -2.20External closing pair is G 135-C 144
Stack -2.40External closing pair is U 136-A 143
Helix -6.00 4 base pairs.
Hairpin loop 2.70Closing pair is C 137-G 142
Stack -3.30External closing pair is C 100-G 121
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is C 101-G 120
Stack -0.90External closing pair is U 103-A 118
Stack -2.10External closing pair is U 104-A 117
Stack -3.40External closing pair is G 105-C 116
Helix -6.40 4 base pairs.
Hairpin loop 4.60Closing pair is C 106-G 115
Stack -2.40External closing pair is U 45-A 83
Stack -2.10External closing pair is C 46-G 82
Stack -2.10External closing pair is A 47-U 81
Stack -3.30External closing pair is G 48-C 80
Stack -2.40External closing pair is G 49-C 79
Stack -0.90External closing pair is A 50-U 78
Helix -13.20 7 base pairs.
Interior loop 4.10External closing pair is A 51-U 77
Stack -0.90External closing pair is U 55-A 72
Stack -0.90External closing pair is U 56-A 71
Stack -1.30External closing pair is U 57-A 70
Stack -1.50External closing pair is U 58-G 69
Stack -2.10External closing pair is C 59-G 68
Helix -6.70 6 base pairs.
Hairpin loop 4.30Closing pair is A 60-U 67