Thermodynamics of Folding

Structure 3
26Apr21-11-52-00
ΔG = -105.00

Structural elementδGInformation
External loop -0.70 10 ss bases & 2 closing helices.
Stack -2.10External closing pair is u 22-a 508
Stack -3.30External closing pair is g 23-c 507
Helix -5.40 3 base pairs.
Bulge loop 1.60External closing pair is g 24-c 506
Stack -0.90External closing pair is u 26-a 505
Stack -2.10External closing pair is u 27-a 504
Stack -2.40External closing pair is g 28-c 503
Stack -1.10External closing pair is a 29-u 502
Stack -2.40External closing pair is u 30-a 501
Helix -8.90 6 base pairs.
Multi-loop 1.50External closing pair is c 31-g 500
12 ss bases & 3 closing helices.
Stack -0.90External closing pair is u 488-a 497
Stack -0.90External closing pair is u 489-a 496
Helix -1.80 3 base pairs.
Hairpin loop 5.10Closing pair is u 490-a 495
Stack -1.40External closing pair is a 35-u 480
Stack -1.00External closing pair is u 36-g 479
Stack -1.10External closing pair is a 37-u 478
Stack -2.40External closing pair is u 38-a 477
Stack -2.10External closing pair is c 39-g 476
Helix -8.00 6 base pairs.
Interior loop 2.60External closing pair is a 40-u 475
Stack -1.40External closing pair is a 43-u 471
Stack -0.60External closing pair is u 44-g 470
Stack -1.30External closing pair is u 45-a 469
Stack -0.90External closing pair is a 46-u 468
Stack -1.40External closing pair is a 47-u 467
Stack -0.60External closing pair is u 48-g 466
Helix -6.20 7 base pairs.
Interior loop 3.40External closing pair is u 49-a 465
Stack -1.30External closing pair is u 53-a 461
Stack -1.40External closing pair is a 54-u 460
Stack -1.50External closing pair is u 55-g 459
Stack -2.10External closing pair is c 56-g 458
Helix -6.30 5 base pairs.
Interior loop 4.70External closing pair is u 57-a 457
Stack -2.10External closing pair is c 63-g 455
Stack -2.10External closing pair is u 64-a 454
Stack -2.20External closing pair is g 65-c 453
Stack -1.30External closing pair is u 66-a 452
Stack -2.20External closing pair is a 67-u 451
Helix -9.90 6 base pairs.
Multi-loop 1.90External closing pair is c 68-g 450
11 ss bases & 3 closing helices.
Stack -1.10External closing pair is a 234-u 448
Stack -0.90External closing pair is u 235-a 447
Stack -0.90External closing pair is u 236-a 446
Stack -2.10External closing pair is u 237-a 445
Helix -5.00 5 base pairs.
Multi-loop 1.80External closing pair is g 238-c 444
15 ss bases & 3 closing helices.
Stack -2.10External closing pair is c 431-g 442
Stack -2.40External closing pair is u 432-a 441
Helix -4.50 3 base pairs.
Hairpin loop 3.20Closing pair is c 433-g 440
Stack -0.90External closing pair is u 252-a 429
Stack -1.30External closing pair is u 253-a 428
Stack -2.10External closing pair is a 254-u 427
Stack -3.30External closing pair is g 255-c 426
Helix -7.60 5 base pairs.
Interior loop 2.50External closing pair is g 256-c 425
Stack -1.30External closing pair is g 262-u 419
Stack -1.10External closing pair is a 263-u 418
Stack -1.30External closing pair is u 264-a 417
Stack -1.40External closing pair is u 265-g 416
Stack -2.20External closing pair is g 266-c 415
Stack -0.90External closing pair is u 267-a 414
Helix -8.20 7 base pairs.
Multi-loop 3.40External closing pair is u 268-a 413
7 ss bases & 3 closing helices.
Stack -2.40External closing pair is g 392-c 411
Stack -0.90External closing pair is a 393-u 410
Stack -0.60External closing pair is a 394-u 409
Stack -1.40External closing pair is g 395-u 408
Stack -0.90External closing pair is u 396-a 407
Stack -1.00External closing pair is u 397-a 406
Stack -0.50External closing pair is g 398-u 405
Helix -7.70 8 base pairs.
Hairpin loop 5.30Closing pair is g 399-u 404
Stack -2.40External closing pair is u 269-a 385
Stack -3.30External closing pair is c 270-g 384
Stack -2.10External closing pair is c 271-g 383
Helix -7.80 4 base pairs.
Bulge loop 3.20External closing pair is a 272-u 382
Stack -0.50External closing pair is g 274-u 381
Stack -1.40External closing pair is g 275-u 380
Stack -1.30External closing pair is u 276-a 379
Stack -0.90External closing pair is a 277-u 378
Helix -4.10 5 base pairs.
Multi-loop 3.80External closing pair is a 278-u 377
13 ss bases & 3 closing helices.
Stack -1.30External closing pair is u 347-a 373
Stack -0.50External closing pair is u 348-g 372
Stack -0.60External closing pair is u 349-g 371
Stack -2.40External closing pair is u 350-a 370
Stack -2.10External closing pair is c 351-g 369
Stack -1.00External closing pair is u 352-a 368
Stack -0.50External closing pair is g 353-u 367
Stack -1.30External closing pair is g 354-u 366
Stack -2.10External closing pair is a 355-u 365
Helix -11.80 10 base pairs.
Hairpin loop 4.80Closing pair is g 356-c 364
Stack -2.10External closing pair is u 285-a 342
Stack -3.30External closing pair is g 286-c 341
Stack -2.20External closing pair is g 287-c 340
Stack -0.90External closing pair is u 288-a 339
Stack -0.90External closing pair is u 289-a 338
Stack -0.90External closing pair is u 290-a 337
Stack -1.30External closing pair is u 291-a 336
Stack -0.60External closing pair is u 292-g 335
Helix -12.20 9 base pairs.
Bulge loop 3.80External closing pair is u 293-a 334
Stack -0.90External closing pair is u 296-a 333
Stack -1.30External closing pair is u 297-a 332
Stack -2.10External closing pair is a 298-u 331
Stack -2.50External closing pair is g 299-c 330
Stack -1.00External closing pair is u 300-g 329
Stack -2.10External closing pair is a 301-u 328
Helix -9.90 7 base pairs.
Bulge loop 4.70External closing pair is g 302-c 327
Stack -2.40External closing pair is g 303-c 318
Stack -2.20External closing pair is a 304-u 317
Stack -2.10External closing pair is c 305-g 316
Stack -2.40External closing pair is u 306-a 315
Stack -2.10External closing pair is c 307-g 314
Helix -11.20 6 base pairs.
Hairpin loop 5.40Closing pair is u 308-g 313
Stack -1.10External closing pair is a 75-u 229
Stack -1.30External closing pair is u 76-a 228
Stack -1.40External closing pair is a 77-u 227
Stack -1.50External closing pair is u 78-g 226
Helix -5.30 5 base pairs.
Interior loop 0.40External closing pair is c 79-g 225
Stack -2.10External closing pair is c 81-g 223
Stack -1.00External closing pair is u 82-g 222
Stack -1.10External closing pair is a 83-u 221
Helix -4.20 4 base pairs.
Interior loop 2.80External closing pair is u 84-a 220
Stack -0.90External closing pair is u 94-a 211
Stack -2.40External closing pair is u 95-a 210
Stack -2.10External closing pair is c 96-g 209
Stack -2.40External closing pair is u 97-a 208
Stack -3.30External closing pair is c 98-g 207
Helix -11.10 6 base pairs.
Interior loop 1.10External closing pair is c 99-g 206
Stack -0.90External closing pair is u 101-a 204
Stack -1.30External closing pair is u 102-a 203
Stack -1.10External closing pair is a 103-u 202
Stack -1.30External closing pair is u 104-a 201
Stack -0.60External closing pair is u 105-g 200
Stack -1.30External closing pair is u 106-a 199
Stack -0.90External closing pair is a 107-u 198
Stack -0.90External closing pair is a 108-u 197
Stack -1.10External closing pair is a 109-u 196
Helix -9.40 10 base pairs.
Multi-loop 1.90External closing pair is u 110-a 195
27 ss bases & 3 closing helices.
Stack -2.10External closing pair is g 149-u 191
Helix -2.10 2 base pairs.
Interior loop -0.30External closing pair is g 150-c 190
Stack -1.40External closing pair is g 153-u 187
Stack -2.10External closing pair is u 154-a 186
Stack -2.40External closing pair is g 155-c 185
Stack -0.90External closing pair is a 156-u 184
Helix -6.80 5 base pairs.
Interior loop 1.00External closing pair is a 157-u 183
Stack -2.10External closing pair is c 159-g 181
Stack -0.60External closing pair is a 160-u 180
Stack -1.40External closing pair is g 161-u 179
Helix -4.10 4 base pairs.
Interior loop 2.70External closing pair is u 162-a 178
Stack -2.20External closing pair is g 166-c 174
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is u 167-a 173
Stack -2.40External closing pair is g 126-c 139
Stack -0.90External closing pair is a 127-u 138
Stack -0.90External closing pair is a 128-u 137
Helix -4.20 4 base pairs.
Hairpin loop 4.30Closing pair is a 129-u 136
Stack -2.50External closing pair is g 3-u 15
Stack -2.10External closing pair is c 4-g 14
Helix -4.60 3 base pairs.
Hairpin loop 4.80Closing pair is a 5-u 13