Thermodynamics of Folding

Structure 4
26Apr21-11-52-00
ΔG = -104.30

Structural elementδGInformation
External loop -0.20 8 ss bases & 1 closing helices.
Stack -2.10External closing pair is u 7-a 508
Stack -3.30External closing pair is g 8-c 507
Stack -2.20External closing pair is g 9-c 506
Helix -7.60 4 base pairs.
Interior loop 7.00External closing pair is u 10-a 505
Stack -0.90External closing pair is u 12-a 494
Stack -1.00External closing pair is u 13-a 493
Stack -1.40External closing pair is g 14-u 492
Stack -1.30External closing pair is u 15-a 491
Stack -0.90External closing pair is a 16-u 490
Stack -0.60External closing pair is a 17-u 489
Helix -6.10 7 base pairs.
Bulge loop 2.40External closing pair is g 18-u 488
Stack -0.90External closing pair is u 20-a 487
Stack -0.90External closing pair is u 21-a 486
Stack -2.10External closing pair is u 22-a 485
Stack -1.50External closing pair is g 23-c 484
Stack -2.50External closing pair is g 24-u 483
Stack -2.10External closing pair is c 25-g 482
Helix -10.00 7 base pairs.
Interior loop 2.30External closing pair is u 26-a 481
Stack -1.10External closing pair is a 29-u 478
Stack -2.40External closing pair is u 30-a 477
Stack -2.10External closing pair is c 31-g 476
Stack -1.10External closing pair is a 32-u 475
Helix -6.70 5 base pairs.
Interior loop 2.50External closing pair is u 33-a 474
Stack -1.30External closing pair is u 36-a 472
Stack -1.40External closing pair is a 37-u 471
Helix -2.70 3 base pairs.
Interior loop 1.70External closing pair is u 38-g 470
Stack -0.60External closing pair is a 40-u 468
Stack -2.50External closing pair is g 41-u 467
Helix -3.10 3 base pairs.
Multi-loop 2.30External closing pair is c 42-g 466
17 ss bases & 3 closing helices.
Stack -0.90External closing pair is u 248-a 462
Stack -1.30External closing pair is u 249-a 461
Stack -2.20External closing pair is a 250-u 460
Stack -2.10External closing pair is c 251-g 459
Stack -0.60External closing pair is u 252-g 458
Helix -7.10 6 base pairs.
Interior loop 4.00External closing pair is u 253-a 457
Stack -2.50External closing pair is g 256-u 451
Stack -2.10External closing pair is c 257-g 450
Stack -1.30External closing pair is u 258-a 449
Stack -1.10External closing pair is a 259-u 448
Stack -0.90External closing pair is u 260-a 447
Helix -7.90 6 base pairs.
Multi-loop 2.00External closing pair is u 261-a 446
15 ss bases & 4 closing helices.
Stack -2.10External closing pair is c 431-g 442
Stack -2.40External closing pair is u 432-a 441
Helix -4.50 3 base pairs.
Hairpin loop 3.20Closing pair is c 433-g 440
Stack -2.10External closing pair is a 388-u 427
Stack -3.30External closing pair is g 389-c 426
Stack -3.30External closing pair is g 390-c 425
Helix -8.70 4 base pairs.
Interior loop 3.40External closing pair is g 391-c 424
Stack -0.90External closing pair is a 393-u 420
Stack -0.60External closing pair is a 394-u 419
Stack -1.40External closing pair is g 395-u 418
Stack -1.30External closing pair is u 396-a 417
Stack -1.40External closing pair is u 397-g 416
Helix -5.60 6 base pairs.
Hairpin loop 4.60Closing pair is g 398-c 415
Stack -2.40External closing pair is u 269-a 385
Stack -3.30External closing pair is c 270-g 384
Stack -2.10External closing pair is c 271-g 383
Helix -7.80 4 base pairs.
Bulge loop 3.20External closing pair is a 272-u 382
Stack -0.50External closing pair is g 274-u 381
Stack -1.40External closing pair is g 275-u 380
Stack -1.30External closing pair is u 276-a 379
Stack -0.90External closing pair is a 277-u 378
Helix -4.10 5 base pairs.
Multi-loop 3.80External closing pair is a 278-u 377
13 ss bases & 3 closing helices.
Stack -1.30External closing pair is u 347-a 373
Stack -0.50External closing pair is u 348-g 372
Stack -0.60External closing pair is u 349-g 371
Stack -2.40External closing pair is u 350-a 370
Stack -2.10External closing pair is c 351-g 369
Stack -1.00External closing pair is u 352-a 368
Stack -0.50External closing pair is g 353-u 367
Stack -1.30External closing pair is g 354-u 366
Stack -2.10External closing pair is a 355-u 365
Helix -11.80 10 base pairs.
Hairpin loop 4.80Closing pair is g 356-c 364
Stack -2.10External closing pair is u 285-a 342
Stack -3.30External closing pair is g 286-c 341
Stack -2.20External closing pair is g 287-c 340
Stack -0.90External closing pair is u 288-a 339
Stack -0.90External closing pair is u 289-a 338
Stack -0.90External closing pair is u 290-a 337
Stack -1.30External closing pair is u 291-a 336
Stack -0.60External closing pair is u 292-g 335
Helix -12.20 9 base pairs.
Bulge loop 3.80External closing pair is u 293-a 334
Stack -0.90External closing pair is u 296-a 333
Stack -1.30External closing pair is u 297-a 332
Stack -2.10External closing pair is a 298-u 331
Stack -2.50External closing pair is g 299-c 330
Stack -1.00External closing pair is u 300-g 329
Stack -2.10External closing pair is a 301-u 328
Helix -9.90 7 base pairs.
Bulge loop 4.70External closing pair is g 302-c 327
Stack -2.40External closing pair is g 303-c 318
Stack -2.20External closing pair is a 304-u 317
Stack -2.10External closing pair is c 305-g 316
Stack -2.40External closing pair is u 306-a 315
Stack -2.10External closing pair is c 307-g 314
Helix -11.20 6 base pairs.
Hairpin loop 5.40Closing pair is u 308-g 313
Stack -0.90External closing pair is a 46-u 236
Stack -1.10External closing pair is a 47-u 235
Stack -0.90External closing pair is u 48-a 234
Stack -1.30External closing pair is u 49-a 233
Stack -1.10External closing pair is a 50-u 232
Helix -5.30 6 base pairs.
Bulge loop 2.50External closing pair is u 51-a 231
Stack -1.10External closing pair is a 52-u 229
Stack -1.30External closing pair is u 53-a 228
Stack -1.40External closing pair is a 54-u 227
Stack -1.50External closing pair is u 55-g 226
Stack -2.10External closing pair is c 56-g 225
Helix -7.40 6 base pairs.
Interior loop -1.00External closing pair is u 57-a 224
Stack -2.10External closing pair is c 59-g 222
Stack -1.10External closing pair is a 60-u 221
Helix -3.20 3 base pairs.
Interior loop 2.00External closing pair is u 61-a 220
Stack -2.20External closing pair is g 65-c 216
Helix -2.20 2 base pairs.
Multi-loop 3.70External closing pair is u 66-a 215
15 ss bases & 3 closing helices.
Stack -0.90External closing pair is u 94-a 211
Stack -2.40External closing pair is u 95-a 210
Stack -2.10External closing pair is c 96-g 209
Stack -2.40External closing pair is u 97-a 208
Stack -3.30External closing pair is c 98-g 207
Helix -11.10 6 base pairs.
Interior loop 1.10External closing pair is c 99-g 206
Stack -0.90External closing pair is u 101-a 204
Stack -1.30External closing pair is u 102-a 203
Stack -1.10External closing pair is a 103-u 202
Stack -1.30External closing pair is u 104-a 201
Stack -0.60External closing pair is u 105-g 200
Stack -1.30External closing pair is u 106-a 199
Stack -0.90External closing pair is a 107-u 198
Stack -0.90External closing pair is a 108-u 197
Stack -1.10External closing pair is a 109-u 196
Helix -9.40 10 base pairs.
Multi-loop 1.90External closing pair is u 110-a 195
27 ss bases & 3 closing helices.
Stack -2.10External closing pair is g 149-u 191
Helix -2.10 2 base pairs.
Interior loop -0.30External closing pair is g 150-c 190
Stack -1.40External closing pair is g 153-u 187
Stack -2.10External closing pair is u 154-a 186
Stack -2.40External closing pair is g 155-c 185
Stack -0.90External closing pair is a 156-u 184
Helix -6.80 5 base pairs.
Interior loop 1.00External closing pair is a 157-u 183
Stack -2.10External closing pair is c 159-g 181
Stack -0.60External closing pair is a 160-u 180
Stack -1.40External closing pair is g 161-u 179
Helix -4.10 4 base pairs.
Interior loop 2.70External closing pair is u 162-a 178
Stack -2.20External closing pair is g 166-c 174
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is u 167-a 173
Stack -2.40External closing pair is g 126-c 139
Stack -0.90External closing pair is a 127-u 138
Stack -0.90External closing pair is a 128-u 137
Helix -4.20 4 base pairs.
Hairpin loop 4.30Closing pair is a 129-u 136
Stack -2.10External closing pair is c 79-g 93
Stack -2.20External closing pair is a 80-u 92
Stack -2.10External closing pair is c 81-g 91
Stack -1.00External closing pair is u 82-g 90
Helix -7.40 5 base pairs.
Hairpin loop 4.50Closing pair is a 83-u 89