Thermodynamics of Folding

Structure 5
26Apr19-23-19-03
ΔG = -84.10

Structural elementδGInformation
External loop -1.70 3 ss bases & 1 closing helices.
Stack -3.30External closing pair is G 1-C 205
Stack -3.30External closing pair is G 2-C 204
Helix -6.60 3 base pairs.
Interior loop 2.30External closing pair is G 3-C 203
Stack -3.40External closing pair is G 6-C 198
Stack -2.40External closing pair is C 7-G 197
Stack -1.50External closing pair is G 8-C 196
Stack -1.30External closing pair is G 9-U 195
Helix -8.60 5 base pairs.
Bulge loop 1.70External closing pair is A 10-U 194
Stack -3.30External closing pair is G 11-C 192
Stack -3.30External closing pair is G 12-C 191
Stack -2.50External closing pair is G 13-C 190
Helix -9.10 4 base pairs.
Interior loop -0.40External closing pair is U 14-G 189
Stack -2.10External closing pair is G 16-U 187
Stack -3.40External closing pair is G 17-C 186
Helix -5.50 3 base pairs.
Multi-loop 2.30External closing pair is C 18-G 185
2 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 165-C 183
Helix -3.40 2 base pairs.
Interior loop 1.60External closing pair is C 166-G 182
Stack -2.20External closing pair is A 169-U 179
Stack -2.10External closing pair is C 170-G 178
Helix -4.30 3 base pairs.
Hairpin loop 5.30Closing pair is A 171-U 177
Stack -2.10External closing pair is C 19-G 163
Stack -1.00External closing pair is U 20-A 162
Stack -2.10External closing pair is G 21-U 161
Stack -1.50External closing pair is G 22-C 160
Stack -1.30External closing pair is G 23-U 159
Helix -8.00 6 base pairs.
Interior loop 1.10External closing pair is A 24-U 158
Interior loop -3.10External closing pair is G 26-C 156
Stack -1.40External closing pair is U 29-G 153
Stack -3.30External closing pair is G 30-C 152
Stack -2.20External closing pair is G 31-C 151
Stack -2.10External closing pair is U 32-A 150
Stack -3.30External closing pair is G 33-C 149
Helix -12.30 6 base pairs.
Multi-loop 2.40External closing pair is G 34-C 148
10 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 64-C 145
Stack -3.40External closing pair is G 65-C 144
Stack -2.40External closing pair is C 66-G 143
Helix -9.10 4 base pairs.
Interior loop 0.90External closing pair is G 67-C 142
Stack -2.10External closing pair is G 70-U 139
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 71-C 138
Stack -3.40External closing pair is G 73-C 137
Stack -3.30External closing pair is C 74-G 136
Stack -2.40External closing pair is C 75-G 135
Helix -9.10 4 base pairs.
Interior loop 1.20External closing pair is G 76-C 134
Stack -3.40External closing pair is G 78-C 131
Stack -2.10External closing pair is C 79-G 130
Stack -0.90External closing pair is U 80-A 129
Stack -0.90External closing pair is U 81-A 128
Stack -0.90External closing pair is U 82-A 127
Helix -8.20 6 base pairs.
Bulge loop 4.50External closing pair is U 83-A 126
Stack -3.30External closing pair is C 89-G 125
Stack -2.40External closing pair is C 90-G 124
Stack -3.40External closing pair is G 91-C 123
Helix -9.10 4 base pairs.
Interior loop -1.70External closing pair is C 92-G 122
Stack -2.40External closing pair is C 94-G 120
Stack -3.40External closing pair is G 95-C 119
Stack -2.10External closing pair is C 96-G 118
Stack -2.10External closing pair is U 97-A 117
Helix -10.00 5 base pairs.
Interior loop 2.30External closing pair is G 98-C 116
Stack -2.40External closing pair is U 103-A 111
Helix -2.40 2 base pairs.
Hairpin loop 3.60Closing pair is C 104-G 110
Stack -0.90External closing pair is U 42-A 62
Helix -0.90 2 base pairs.
Interior loop -0.40External closing pair is U 43-A 61
Stack -2.40External closing pair is U 45-A 59
Helix -2.40 2 base pairs.
Hairpin loop 4.60Closing pair is C 46-G 58