Thermodynamics of Folding

Structure 5
26Mar01-00-05-10
ΔG = -70.90

Structural elementδGInformation
External loop 0.30 19 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 134-U 233
Stack -1.30External closing pair is U 135-A 232
Stack -0.90External closing pair is A 136-U 231
Helix -3.30 4 base pairs.
Interior loop -0.40External closing pair is A 137-U 230
Stack -1.30External closing pair is U 139-A 228
Stack -1.10External closing pair is A 140-U 227
Stack -2.40External closing pair is U 141-A 226
Stack -2.10External closing pair is C 142-G 225
Stack -0.90External closing pair is U 143-A 224
Helix -7.80 6 base pairs.
Interior loop 3.00External closing pair is U 144-A 223
Stack -2.10External closing pair is A 147-U 219
Helix -2.10 2 base pairs.
Bulge loop 1.40External closing pair is G 148-C 218
Stack -0.90External closing pair is A 150-U 217
Stack -2.10External closing pair is A 151-U 216
Stack -2.40External closing pair is G 152-C 215
Stack -0.60External closing pair is A 153-U 214
Stack -2.10External closing pair is G 154-U 213
Helix -8.10 6 base pairs.
Interior loop -1.00External closing pair is G 155-C 212
Stack -0.90External closing pair is A 157-U 210
Stack -1.40External closing pair is A 158-U 209
Stack -1.00External closing pair is U 159-G 208
Stack -0.60External closing pair is A 160-U 207
Stack -2.10External closing pair is G 161-U 206
Helix -6.00 6 base pairs.
Interior loop -4.40External closing pair is G 162-C 205
Interior loop 1.10External closing pair is G 165-C 202
Stack -0.90External closing pair is A 167-U 200
Stack -0.90External closing pair is A 168-U 199
Stack -0.90External closing pair is A 169-U 198
Stack -0.90External closing pair is A 170-U 197
Stack -0.90External closing pair is A 171-U 196
Helix -4.50 6 base pairs.
Interior loop 1.70External closing pair is A 172-U 195
Stack -0.90External closing pair is A 174-U 193
Stack -0.90External closing pair is A 175-U 192
Stack -2.10External closing pair is A 176-U 191
Stack -2.40External closing pair is G 177-C 190
Stack -0.60External closing pair is A 178-U 189
Stack -1.30External closing pair is G 179-U 188
Stack -1.40External closing pair is A 180-U 187
Helix -9.60 8 base pairs.
Hairpin loop 5.00Closing pair is U 181-G 186
Stack -0.50External closing pair is G 76-U 123
Stack -2.50External closing pair is G 77-U 122
Stack -2.10External closing pair is C 78-G 121
Stack -2.10External closing pair is A 79-U 120
Stack -3.40External closing pair is G 80-C 119
Helix -10.60 6 base pairs.
Interior loop 1.10External closing pair is C 81-G 118
Stack -2.40External closing pair is G 83-C 116
Stack -0.60External closing pair is A 84-U 115
Stack -1.30External closing pair is G 85-U 114
Helix -4.30 4 base pairs.
Interior loop 0.90External closing pair is A 86-U 113
Stack -3.30External closing pair is C 89-G 110
Helix -3.30 2 base pairs.
Interior loop 0.40External closing pair is C 90-G 109
Stack -2.40External closing pair is G 92-C 107
Stack -0.90External closing pair is A 93-U 106
Stack -0.90External closing pair is A 94-U 105
Stack -0.90External closing pair is A 95-U 104
Stack -0.90External closing pair is A 96-U 103
Helix -6.00 6 base pairs.
Hairpin loop 3.00Closing pair is A 97-U 102
Stack -1.30External closing pair is G 6-U 73
Stack -0.60External closing pair is A 7-U 72
Stack -1.40External closing pair is G 8-U 71
Stack -2.10External closing pair is U 9-A 70
Stack -3.40External closing pair is G 10-C 69
Stack -2.10External closing pair is C 11-G 68
Helix -10.90 7 base pairs.
Multi-loop 1.20External closing pair is U 12-A 67
6 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 34-G 64
Stack -2.10External closing pair is U 35-A 63
Helix -4.20 3 base pairs.
Interior loop 1.10External closing pair is G 36-C 62
Stack -2.40External closing pair is U 38-A 60
Stack -2.10External closing pair is C 39-G 59
Stack -0.90External closing pair is A 40-U 58
Stack -0.60External closing pair is A 41-U 57
Stack -1.30External closing pair is G 42-U 56
Stack -0.60External closing pair is A 43-U 55
Helix -7.90 7 base pairs.
Bulge loop 1.70External closing pair is G 44-U 54
Stack -2.50External closing pair is G 46-C 53
Helix -2.50 2 base pairs.
Hairpin loop 5.10Closing pair is U 47-G 52
Stack -2.50External closing pair is G 16-C 32
Stack -1.00External closing pair is U 17-G 31
Stack -1.40External closing pair is A 18-U 30
Helix -4.90 4 base pairs.
Bulge loop 3.70External closing pair is U 19-G 29
Hairpin loop 0.20Closing pair is G 20-C 25