Thermodynamics of Folding

Structure 6
3 prime UTR of N gene
ΔG = -43.20

Structural elementδGInformation
External loop 0.70 4 ss bases & 2 closing helices.
Stack -1.30External closing pair is G 23-U 192
Stack -2.10External closing pair is A 24-U 191
Stack -3.40External closing pair is G 25-C 190
Helix -6.80 4 base pairs.
Multi-loop 2.40External closing pair is C 26-G 189
11 ss bases & 3 closing helices.
Stack -1.30External closing pair is U 76-A 187
Stack -1.40External closing pair is A 77-U 186
Stack -0.60External closing pair is U 78-G 185
Stack -2.40External closing pair is U 79-A 184
Helix -5.70 5 base pairs.
Multi-loop 0.10External closing pair is C 80-G 183
22 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 139-U 179
Stack -0.90External closing pair is U 140-A 178
Stack -2.40External closing pair is U 141-A 177
Stack -2.10External closing pair is C 142-G 176
Stack -2.40External closing pair is U 143-A 175
Helix -9.20 6 base pairs.
Interior loop 1.20External closing pair is C 144-G 174
Stack -2.40External closing pair is G 149-C 169
Stack -2.10External closing pair is A 150-U 168
Helix -4.50 3 base pairs.
Bulge loop 0.50External closing pair is G 151-C 167
Stack -2.20External closing pair is G 152-C 165
Stack -0.90External closing pair is U 153-A 164
Stack -2.40External closing pair is U 154-A 163
Stack -2.10External closing pair is C 155-G 162
Helix -7.60 5 base pairs.
Hairpin loop 5.30Closing pair is A 156-U 161
Stack -2.20External closing pair is G 87-C 125
Stack -0.90External closing pair is U 88-A 124
Stack -1.30External closing pair is U 89-A 123
Stack -1.10External closing pair is A 90-U 122
Stack -2.40External closing pair is U 91-A 121
Stack -2.10External closing pair is C 92-G 120
Stack -2.10External closing pair is U 93-A 119
Stack -3.30External closing pair is G 94-C 118
Stack -3.30External closing pair is G 95-C 117
Helix -18.70 10 base pairs.
Bulge loop 4.00External closing pair is G 96-C 116
Stack -2.10External closing pair is C 97-G 110
Stack -0.90External closing pair is U 98-A 109
Helix -3.00 3 base pairs.
Hairpin loop 5.00Closing pair is U 99-A 108
Stack -2.10External closing pair is A 29-U 67
Stack -2.40External closing pair is G 30-C 66
Helix -4.50 3 base pairs.
Bulge loop 1.70External closing pair is A 31-U 65
Stack -2.40External closing pair is G 33-C 64
Stack -0.90External closing pair is A 34-U 63
Helix -3.30 3 base pairs.
Multi-loop 0.70External closing pair is A 35-U 62
5 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 52-C 59
Helix -3.30 2 base pairs.
Hairpin loop 4.50Closing pair is G 53-C 58
Stack -2.10External closing pair is C 38-G 50
Stack -1.10External closing pair is A 39-U 49
Stack -2.10External closing pair is U 40-A 48
Helix -5.30 4 base pairs.
Hairpin loop 4.50Closing pair is G 41-C 47
Stack -0.90External closing pair is U 5-A 22
Stack -2.10External closing pair is U 6-A 21
Stack -3.40External closing pair is G 7-C 20
Helix -6.40 4 base pairs.
Hairpin loop 4.50Closing pair is C 8-G 19