Thermodynamics of Folding

Structure 8
26Apr20-05-56-12
ΔG = -166.70

Structural elementδGInformation
External loop -1.10 13 ss bases & 2 closing helices.
Stack -1.40External closing pair is G 450-U 568
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 451-A 567
Stack -1.40External closing pair is A 453-U 565
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 454-G 564
Stack -1.40External closing pair is G 456-U 562
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 457-A 561
Stack -1.40External closing pair is A 459-U 559
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 460-G 558
Stack -1.40External closing pair is G 462-U 556
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 463-A 555
Stack -1.40External closing pair is A 465-U 553
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 466-G 552
Stack -1.40External closing pair is G 468-U 550
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 469-A 549
Stack -1.40External closing pair is A 471-U 547
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 472-G 546
Stack -1.40External closing pair is G 474-U 544
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 475-A 543
Stack -1.40External closing pair is A 477-U 541
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 478-G 540
Stack -1.40External closing pair is G 480-U 538
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 481-A 537
Stack -1.40External closing pair is A 483-U 535
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 484-G 534
Stack -1.40External closing pair is G 486-U 532
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 487-A 531
Stack -1.40External closing pair is A 489-U 529
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 490-G 528
Stack -1.40External closing pair is G 492-U 526
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 493-A 525
Stack -1.40External closing pair is A 495-U 523
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 496-G 522
Stack -1.40External closing pair is G 498-U 520
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 499-A 519
Stack -1.40External closing pair is A 501-U 517
Helix -1.40 2 base pairs.
Interior loop -0.40External closing pair is U 502-G 516
Stack -1.40External closing pair is G 504-U 514
Helix -1.40 2 base pairs.
Hairpin loop 5.20Closing pair is U 505-A 513
Stack -2.50External closing pair is G 9-U 445
Stack -3.30External closing pair is C 10-G 444
Stack -1.40External closing pair is C 11-G 443
Helix -7.20 4 base pairs.
Bulge loop 1.30External closing pair is G 12-U 442
Stack -2.10External closing pair is C 13-G 440
Helix -2.10 2 base pairs.
Bulge loop 2.40External closing pair is A 14-U 439
Stack -1.50External closing pair is U 16-G 438
Stack -2.10External closing pair is C 17-G 437
Helix -3.60 3 base pairs.
Interior loop 0.90External closing pair is A 18-U 436
Stack -3.30External closing pair is C 22-G 432
Helix -3.30 2 base pairs.
Interior loop 0.50External closing pair is C 23-G 431
Interior loop -2.40External closing pair is C 27-G 428
Stack -1.40External closing pair is C 30-G 425
Helix -1.40 2 base pairs.
Interior loop 2.50External closing pair is G 31-U 424
Stack -2.50External closing pair is G 33-U 421
Stack -3.30External closing pair is C 34-G 420
Helix -5.80 3 base pairs.
Multi-loop 1.70External closing pair is C 35-G 419
14 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 87-G 416
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is A 88-U 415
Stack -1.40External closing pair is C 90-G 413
Stack -1.40External closing pair is G 91-U 412
Stack -1.30External closing pair is U 92-A 411
Helix -4.10 4 base pairs.
Bulge loop 2.30External closing pair is U 93-G 410
Stack -2.10External closing pair is C 94-G 408
Stack 0.30External closing pair is U 95-G 407
Stack -1.40External closing pair is G 96-U 406
Stack -2.40External closing pair is U 97-A 405
Helix -5.60 5 base pairs.
Interior loop 0.50External closing pair is C 98-G 404
Stack -3.30External closing pair is C 100-G 402
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is C 101-G 401
Interior loop -3.90External closing pair is U 103-A 399
Stack -3.30External closing pair is C 106-G 396
Stack -1.40External closing pair is C 107-G 395
Stack -1.40External closing pair is G 108-U 394
Stack -2.40External closing pair is U 109-A 393
Helix -8.50 5 base pairs.
Bulge loop 0.50External closing pair is C 110-G 392
Stack -3.30External closing pair is C 111-G 390
Stack -2.10External closing pair is C 112-G 389
Helix -5.40 3 base pairs.
Multi-loop 2.50External closing pair is A 113-U 388
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is U 189-A 384
Helix -2.40 2 base pairs.
Bulge loop 0.50External closing pair is C 190-G 383
Stack -3.30External closing pair is C 191-G 381
Stack -2.10External closing pair is C 192-G 380
Helix -5.40 3 base pairs.
Interior loop 0.50External closing pair is A 193-U 379
Stack -1.40External closing pair is A 196-U 376
Helix -1.40 2 base pairs.
Bulge loop 4.60External closing pair is U 197-G 375
Stack -2.50External closing pair is G 198-U 370
Stack -3.30External closing pair is C 199-G 369
Stack -2.10External closing pair is C 200-G 368
Helix -7.90 4 base pairs.
Interior loop 0.30External closing pair is A 201-U 367
Stack -1.50External closing pair is G 204-C 364
Stack -2.50External closing pair is G 205-U 363
Stack -2.10External closing pair is C 206-G 362
Stack -2.10External closing pair is U 207-A 361
Stack -3.40External closing pair is G 208-C 360
Stack -2.10External closing pair is C 209-G 359
Stack -2.40External closing pair is U 210-A 358
Helix -16.10 8 base pairs.
Multi-loop 1.70External closing pair is C 211-G 357
8 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 341-G 352
Stack -2.10External closing pair is C 342-G 351
Stack -1.10External closing pair is A 343-U 350
Helix -6.50 4 base pairs.
Hairpin loop 4.90Closing pair is U 344-A 349
Stack -3.30External closing pair is G 215-C 339
Stack -2.50External closing pair is G 216-C 338
Stack -1.50External closing pair is U 217-G 337
Helix -7.30 4 base pairs.
Multi-loop 2.90External closing pair is C 218-G 336
8 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 320-U 335
Stack -3.40External closing pair is G 321-C 334
Helix -5.50 3 base pairs.
Interior loop 1.10External closing pair is C 322-G 333
Stack -2.40External closing pair is U 324-A 331
Helix -2.40 2 base pairs.
Hairpin loop 3.80Closing pair is C 325-G 330
Stack -2.10External closing pair is C 220-G 312
Stack -2.10External closing pair is A 221-U 311
Stack -3.30External closing pair is G 222-C 310
Stack -2.20External closing pair is G 223-C 309
Stack -2.10External closing pair is U 224-A 308
Helix -11.80 6 base pairs.
Interior loop 2.50External closing pair is G 225-C 307
Stack -2.10External closing pair is U 230-A 301
Stack -3.30External closing pair is G 231-C 300
Helix -5.40 3 base pairs.
Multi-loop 3.00External closing pair is G 232-C 299
7 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 264-C 296
Stack -2.10External closing pair is C 265-G 295
Stack -2.10External closing pair is A 266-U 294
Stack -3.30External closing pair is G 267-C 293
Helix -10.90 5 base pairs.
Interior loop 1.20External closing pair is G 268-C 292
Stack -2.20External closing pair is A 270-U 289
Helix -2.20 2 base pairs.
Interior loop 0.60External closing pair is C 271-G 288
Stack -0.60External closing pair is U 274-G 285
Stack -1.30External closing pair is U 275-A 284
Stack -2.20External closing pair is A 276-U 283
Helix -4.10 4 base pairs.
Hairpin loop 3.80Closing pair is C 277-G 282
Stack -1.10External closing pair is A 238-U 263
Stack -2.10External closing pair is U 239-A 262
Stack -3.30External closing pair is G 240-C 261
Stack -3.30External closing pair is G 241-C 260
Stack -3.40External closing pair is G 242-C 259
Helix -13.20 6 base pairs.
Bulge loop 3.60External closing pair is C 243-G 258
Stack -3.30External closing pair is G 248-C 257
Stack -2.50External closing pair is G 249-C 256
Helix -5.80 3 base pairs.
Hairpin loop 4.80Closing pair is U 250-G 255
Stack -2.10External closing pair is C 116-G 184
Helix -2.10 2 base pairs.
Interior loop 2.50External closing pair is A 117-U 183
Stack -2.10External closing pair is U 119-A 180
Stack -3.30External closing pair is G 120-C 179
Stack -2.40External closing pair is G 121-C 178
Stack -1.40External closing pair is A 122-U 177
Helix -9.20 5 base pairs.
Multi-loop 3.50External closing pair is U 123-G 176
6 ss bases & 3 closing helices.
Stack -2.10External closing pair is U 157-A 174
Stack -3.30External closing pair is G 158-C 173
Helix -5.40 3 base pairs.
Interior loop 1.10External closing pair is G 159-C 172
Stack -2.40External closing pair is U 161-A 170
Helix -2.40 2 base pairs.
Hairpin loop 3.90Closing pair is C 162-G 169
Stack -0.90External closing pair is U 126-A 153
Helix -0.90 2 base pairs.
Interior loop -2.90External closing pair is U 127-A 152
Stack -1.10External closing pair is A 130-U 149
Stack -1.00External closing pair is U 131-A 148
Helix -2.10 3 base pairs.
Interior loop 1.70External closing pair is G 132-U 147
Stack -1.40External closing pair is U 134-G 145
Stack -2.20External closing pair is G 135-C 144
Stack -2.40External closing pair is U 136-A 143
Helix -6.00 4 base pairs.
Hairpin loop 2.70Closing pair is C 137-G 142
Stack -2.40External closing pair is U 45-A 83
Stack -2.10External closing pair is C 46-G 82
Stack -2.10External closing pair is A 47-U 81
Stack -3.30External closing pair is G 48-C 80
Stack -2.40External closing pair is G 49-C 79
Stack -0.90External closing pair is A 50-U 78
Helix -13.20 7 base pairs.
Interior loop 4.10External closing pair is A 51-U 77
Stack -0.90External closing pair is U 55-A 72
Stack -0.90External closing pair is U 56-A 71
Stack -1.30External closing pair is U 57-A 70
Stack -1.50External closing pair is U 58-G 69
Stack -2.10External closing pair is C 59-G 68
Helix -6.70 6 base pairs.
Hairpin loop 4.30Closing pair is A 60-U 67