RNA folding results on dzf for 162.105.150.199
Initial ΔG = -36.90
10 20 30 40
CGCG .-AACUCUAUUU .-C A--- .-UUAA| A
GGCGUC UUCC AGCU AAUUAG UAC U
CUGCAG AAGG UCGG UUAAUC AUG C
---- \ ---------- \ - CAUA \ ----^ A
230 120 80 50
60
AAAA GU
UGAG C
ACUU A
UC-- AU
70
90
AA--- UAUCCCUUAC
UGA \
ACU C
AUUUC UUUUAAAAAA
110
130 140 150 160 170
U- AGG UCCUUAU U GUACCAC CA ACCCU
GGUUG GGU GCUUUC UC CUUU AAAU \
CCAAC CCA CGAGAG AG GAAG UUUA U
AA ACA CAACACU U AAAAAAA UC AUUUU
220 210 200 190 180
Structure 2
Folding bases 1 to 230 of dzf
Initial ΔG = -36.60
10 20 30
CGCG .-AACUCUAUUU .-C A
GGCGUC UUCC AGCUA \
CUGCAG AAGG UUGAU A
---- \ ---------- \ - U
230 120
40 50 60
AAUA--------------------------| C AAAAAU---- GUCA
CAU AGU GAG U
GUA UCG CUC A
AUUUCACUUUUUAAAAAACCAUUCCCUAUA^ A GCAUAUUAAU ACUU
110 100 90 80 70
130 140 150 160 170
U- AGG UCCUUAU U GUACCAC CA ACCCU
GGUUG GGU GCUUUC UC CUUU AAAU \
CCAAC CCA CGAGAG AG GAAG UUUA U
AA ACA CAACACU U AAAAAAA UC AUUUU
220 210 200 190 180
Structure 3
Folding bases 1 to 230 of dzf
Initial ΔG = -36.53
10 20 30
CGCG .-AACUCUAUUUUUCCC A
GGCGUC AGCUA \
CUGCAG UUGAU A
---- \ --------------- U
230
40 50 60 70 80 90 100 110
AAUACAUCAGUAAAAA-| G AUAU C .-AAUUAUAC - U U - AAAAAUU AC
UGAG UC UCA UCU GGC UAA GA AUCCCUUA CCA UUUC U
ACUC AG AGU AGA UCG AUU CU UGGGGAGU GGU AAGG U
AACCAACACACCACAAC^ G ---- - \ -------- U C - U ------- AU
220 210 200 140 130 120
150 160
---- UACCACCUUUCAAAA
UUCUUCG U
AAGAAGU A
AAAA CUUUAAUUUUUUCCC
190 180 170
Structure 4
Folding bases 1 to 230 of dzf
Initial ΔG = -35.90
10 20 30 40 50
CGCG .-AACUCUAUUU .-C A--- UU-- CA---| GUA
GGCGUC UUCC AGCU AAUUAG AAUA UCA \
CUGCAG AAGG UCGG UUAAUC UUAU AGU A
---- \ ---------- \ - CAUA UCAC ACUGG^ AAA
230 120 80 70 60
90
AA--- UAUCCCUUAC
UGA \
ACU C
AUUUC UUUUAAAAAA
110
130 140 150 160 170
U- AGG UCCUUAU U GUACCAC CA ACCCU
GGUUG GGU GCUUUC UC CUUU AAAU \
CCAAC CCA CGAGAG AG GAAG UUUA U
AA ACA CAACACU U AAAAAAA UC AUUUU
220 210 200 190 180
Structure 5
Folding bases 1 to 230 of dzf
Initial ΔG = -35.70
10 20 30
CGCG .-AACUCUAUUU .-C A
GGCGUC UUCC AGCUA \
CUGCAG AAGG UUGAU A
---- \ ---------- \ - U
230 120
40 50 60 70
AAUACAUCAGUAAAAA----| UC CACU- AAU
UGAGG AUAUU CU U
AUUCC UAUAG GG A
AUUUCACUUUUUAAAAAACC^ C- UAAUC CAU
110 100 90 80
130 140 150 160 170
U- AGG UCCUUAU U GUACCAC CA ACCCU
GGUUG GGU GCUUUC UC CUUU AAAU \
CCAAC CCA CGAGAG AG GAAG UUUA U
AA ACA CAACACU U AAAAAAA UC AUUUU
220 210 200 190 180
Structure 6
Folding bases 1 to 230 of dzf
Initial ΔG = -35.63
10 20
CGCG .-AACU| U UCC
GGCGUC CUA UUU C
CUGCAG GAU AAA A
---- \ ----^ U UCG
230 30
40 50 60 70 80 90 100 110
UUAAUACAUCAGUAAAAA G AUAU C .-AAUUAUAC - U U - AAAAAUU AC
UGAG UC UCA UCU GGC UAA GA AUCCCUUA CCA UUUC U
ACUC AG AGU AGA UCG AUU CU UGGGGAGU GGU AAGG U
AACCAACACACCACAAC- G ---- - \ -------- U C - U ------- AU
220 210 200 140 130 120
150 160
---- UACCACCUUUCAAAA
UUCUUCG U
AAGAAGU A
AAAA CUUUAAUUUUUUCCC
190 180 170
Structure 7
Folding bases 1 to 230 of dzf
Initial ΔG = -35.50
10 20 30
CGCG .-AAC A .-CC A
GGCGUC UCU UUUUUC AGCUA \
CUGCAG AGA AAAAAG UUGAU A
---- \ --- A \ -- U
230 190
40 50 60
AAUACA| ---- .-U GUCA
UCAG UAAAAA GAG U
AGUC AUUUUU CUC A
A-----^ UUUA \ - ACUU
180 70
80 90 100 110
UAAUUAUAC------------------- - U U - AAAAAUU AC
GGC UAA GA AUCCCUUA CCA UUUC U
UCG AUU CU UGGGGAGU GGU AAGG U
UCCCAUAAAACUUUCCACCAUGCUUCUU U C - U ------- AU
170 160 150 140 130 120
200
U----------------- G
GA A
CU G
AACCAACACACCACAACA C
220 210
Structure 8
Folding bases 1 to 230 of dzf
Initial ΔG = -35.40
10 20 30
CGCG .-AACUCUAUUU .-C A
GGCGUC UUCC AGCUA \
CUGCAG AAGG UUGAU A
---- \ ---------- \ - U
230 120
40 50 60
AAUACAUC -| GUCA
AGU AAAAAU--GAG U
UCA UUUUUA CUC A
AUU----- C^ \ ACUU
110 70
80 90
UAAUUAUAC C UGAU
GG UAA \
CC AUU A
AAAAA---- - CCCU
100
130 140 150 160 170
U- AGG UCCUUAU U GUACCAC CA ACCCU
GGUUG GGU GCUUUC UC CUUU AAAU \
CCAAC CCA CGAGAG AG GAAG UUUA U
AA ACA CAACACU U AAAAAAA UC AUUUU
220 210 200 190 180
Structure 9
Folding bases 1 to 230 of dzf
Initial ΔG = -35.30
10 20 30 40
CGCG .-AAC A C- CU| .-UUAA A
GGCGUC UCU UUUUUC CAG AAAUUAG UAC U
CUGCAG AGA AAAAAG GUC UUUAAUU AUG C
---- \ --- A AA --^ \ ---- A
230 190 180 50
60 70 80 90 100 110
AAA-------------------- UCAUAUUCACUCUAAUUAUAC - U U - AAAAAUU AC
AUGAGG GGC UAA GA AUCCCUUA CCA UUUC U
UGCUUC UCG AUU CU UGGGGAGU GGU AAGG U
UUUUCCCAUAAAACUUUCCACCA UU------------------- U C - U ------- AU
170 160 150 140 130 120
200
U----------------- G
GA A
CU G
AACCAACACACCACAACA C
220 210
Structure 10
Folding bases 1 to 230 of dzf
Initial ΔG = -35.20
10 20 30
CGCG .-AACUCUAUUU .-C A
GGCGUC UUCC AGCUA \
CUGCAG AAGG UUGAU A
---- \ ---------- \ - U
230 120
40 50 60 70
AAUACAUC - .-GA| A UCACU
AGU AAAAAU GGUC UAU \
UCA UUUUUA UCGG AUA C
AUU----- C \ --^ C UUAAU
110 80
90
AA-- A UC
UG UA \
AC AU C
AAAA C UC
100
130 140 150 160 170
U- AGG UCCUUAU U GUACCAC CA ACCCU
GGUUG GGU GCUUUC UC CUUU AAAU \
CCAAC CCA CGAGAG AG GAAG UUUA U
AA ACA CAACACU U AAAAAAA UC AUUUU
220 210 200 190 180
Structure 11
Folding bases 1 to 230 of dzf
Initial ΔG = -35.10
10 20 30
CGCG .-AACUCUAUUUUUCCC A
GGCGUC AGCUA \
CUGCAG UUGAU A
---- \ --------------- U
230
40 50 60 70 80 90
AAUACAUCAGUAAAAA- G .-AUAUUCACUCUAAUUAUAC C UGAU
UGAG UC GG UAA \
ACUC AG CC AUU A
AACCAACACACCACAAC G \ ------------------- - CCCU
220 210 100
110 120 130 140 150
AAAAAA| CA GGUU UCCUUAUGCUUUCUUC
UUUUU CUUUAGGAAU GAGGGGU \
AAAAA GAAGUCUUUA UUUCCCA G
AGUAG-^ AA AUUU UAAAACUUUCCACCAU
200 190 180 170 160
mfold version 3.6M. Zuker, Rensselaer Polytechnic Institute