Structure 1 Folding bases 1 to 217 of 26Mar01-00-04-00
Initial ΔG = -70.90

             10          20        30 
     .-UGA   -     G--|  G       U  A 
--UGG     CGG AGUGC   CUG UCAAGAG GU A
  ACC     GCC UUACG   GAC AGUUUUU CG A
\    \ ---   U     AGA^  A       -  A 
                 50        40         


         60        70        80 
       --     A    GA  U      G 
         GCAGC GAGA  CC GAAAAA C
         UGUCG CUUU  GG CUUUUU A
       UU     A    AA  U      A 
           100        90        


110       120        130       140       150       160     
  AACUCA    G      CU-  C      G      UG G      A        U 
        AUAA UAUCUU   AG AAGAGG AAUAGG  G AAAAAA AAAGAGAU U
        UAUU AUAGAA   UC UUCUUC UUGUUC  C UUUUUU UUUCUUUG C
  UC----    G      UUU  -      G      GU A      C        G 
           210       200        190       180       170    


 

---

Structure 2 Folding bases 1 to 217 of 26Mar01-00-04-00
Initial ΔG = -70.50

            10          20 
     .-UGA    .-G|     GGU 
--UGG     CGGA   UGCGCU   \
  ACC     GCCU   AUGUGA   C
\    \ ---    \ -^     GAA 
                30         


                        40  
                AAA       G 
                   GCUUUUU A
                   CGAGAGA A
                UUA       C 
                   50       


         60        70        80 
       --     A    GA  U      G 
         GCAGC GAGA  CC GAAAAA C
         UGUCG CUUU  GG CUUUUU A
       UU     A    AA  U      A 
           100        90        


110       120        130       140       150       160     
  AACUCA    G      CU-  C      G      UG G      A        U 
        AUAA UAUCUU   AG AAGAGG AAUAGG  G AAAAAA AAAGAGAU U
        UAUU AUAGAA   UC UUCUUC UUGUUC  C UUUUUU UUUCUUUG C
  UC----    G      UUU  -      G      GU A      C        G 
           210       200        190       180       170    


 

---

Structure 3 Folding bases 1 to 217 of 26Mar01-00-04-00
Initial ΔG = -68.90

          10          20 
U      .-G|          GGU 
 GGUGAC   GAGU--GCGCU   \
 CUAUUG   CUCA  UGUGA   C
U      \ -^   \      GAA 
                         


                 30        40  
                .-AAAA       G 
                      GCUUUUU A
                      CGAGAGA A
                \ ----       C 
                      50       


                         60        70        80 
                  AUUUCC      A    GA  U      G 
                        GGCAGC GAGA  CC GAAAAA C
                        UUGUCG CUUU  GG CUUUUU A
                  AACCU-      A    AA  U      A 
                110        100        90        


            120        130       140       150       160     
         AAUAAG      CU-  C      G      UG G      A        U 
               UAUCUU   AG AAGAGG AAUAGG  G AAAAAA AAAGAGAU U
               AUAGAA   UC UUCUUC UUGUUC  C UUUUUU UUUCUUUG C
         ------      UUU  -      G      GU A      C        G 
             210       200        190       180       170    


 

---

Structure 4 Folding bases 1 to 217 of 26Mar01-00-04-00
Initial ΔG = -68.50

            10           20    
     U     .-AG|  -     .-U  A 
--UGG GACGG    UGC GCUGG   CA G
  ACC UUGUC    ACG CGGCC   GU A
\    U     \ --^  A     \ -  G 
                  60           


                          30        40  
                          UAAAA       G 
                               GCUUUUU A
                               CGAGAGA A
                          UUUA-       C 
                               50       


                   70        80 
             --    GA  U      G 
               GAGA  CC GAAAAA C
               CUUU  GG CUUUUU A
             GA    AA  U      A 
           100        90        


110       120        130       140       150       160     
  AACUCA    G      CU-  C      G      UG G      A        U 
        AUAA UAUCUU   AG AAGAGG AAUAGG  G AAAAAA AAAGAGAU U
        UAUU AUAGAA   UC UUCUUC UUGUUC  C UUUUUU UUUCUUUG C
  UC----    G      UUU  -      G      GU A      C        G 
           210       200        190       180       170    


 

---

mfold version 3.6
M. Zuker, Rensselaer Polytechnic Institute