RNA folding results on 26Mar01-00-05-10 for 74.96.252.240
Structure 1
Folding bases 1 to 235 of 26Mar01-00-05-10
Initial ΔG = -74.20
M. Zuker, Rensselaer Polytechnic Institute
Initial ΔG = -74.20
10 20 30 40
.-UCAAA GCUA .-UAUGGUGA - G--| G U A
GAGU UGG CGG AGUGC CUG UCAAGAG GU A
CUCA ACC GCC UUACG GAC AGUUUUU CG A
\ ----- A--- \ -------- U AGA^ A - A
130 70 60 50
80 90
-- A GA U G
GCAGC GAGA CC GAAAAA C
UGUCG CUUU GG CUUUUU A
UU A AA U A
120 110 100
140 150 160 170 180
A- G CU- C G UG G A U
AUAA UAUCUU AG AAGAGG AAUAGG G AAAAAA AAAGAGAU U
UAUU AUAGAA UC UUCUUC UUGUUC C UUUUUU UUUCUUUG C
UC G UUU - G GU A C G
230 220 210 200 190
Structure 2
Folding bases 1 to 235 of 26Mar01-00-05-10
Initial ΔG = -73.80
10 20 30
.-UCAAA GCUA .-UAUGGUGA .-G| GGU
GAGU UGG CGGA UGCGCU \
CUCA ACC GCCU AUGUGA C
\ ----- A--- \ -------- \ -^ GAA
130 40
50 60
AAA G
GCUUUUU A
CGAGAGA A
UUA C
70
80 90
-- A GA U G
GCAGC GAGA CC GAAAAA C
UGUCG CUUU GG CUUUUU A
UU A AA U A
120 110 100
140 150 160 170 180
A- G CU- C G UG G A U
AUAA UAUCUU AG AAGAGG AAUAGG G AAAAAA AAAGAGAU U
UAUU AUAGAA UC UUCUUC UUGUUC C UUUUUU UUUCUUUG C
UC G UUU - G GU A C G
230 220 210 200 190
Structure 3
Folding bases 1 to 235 of 26Mar01-00-05-10
Initial ΔG = -73.30
10 20
.-UCAAAG U| GGUA G
AGUGC AU UG U
UCGCG UG GC G
\ ------ -^ AG-- A
30
40 50 60
.-GGUCAA .-GUAAAA G
GAGU GCUUUUU A
CUCA CGAGAGA A
\ ------ \ ------ C
130
70 80 90
AUUUCC A GA U G
GGCAGC GAGA CC GAAAAA C
UUGUCG CUUU GG CUUUUU A
AACCU- A AA U A
120 110 100
140 150 160 170 180
A- G CU- C G UG G A U
AUAA UAUCUU AG AAGAGG AAUAGG G AAAAAA AAAGAGAU U
UAUU AUAGAA UC UUCUUC UUGUUC C UUUUUU UUUCUUUG C
UC G UUU - G GU A C G
230 220 210 200 190
Structure 4
Folding bases 1 to 235 of 26Mar01-00-05-10
Initial ΔG = -71.40
10 20
| .-GCUAUGGUA G
--UCAAAGAGU UG U
AGUUUUUCG GC G
\ ^ \ --------- A
60
30
GAG GGU
UGCGCU \
AUGUGA C
AAA GAA
50 40
70 80 90
.-ACAGA CAUUUCC A GA U G
GAG GGCAGC GAGA CC GAAAAA C
CUC UUGUCG CUUU GG CUUUUU A
\ ----- AAACCU- A AA U A
130 120 110 100
140 150 160 170 180
A- G CU- C G UG G A U
AUAA UAUCUU AG AAGAGG AAUAGG G AAAAAA AAAGAGAU U
UAUU AUAGAA UC UUCUUC UUGUUC C UUUUUU UUUCUUUG C
UC G UUU - G GU A C G
230 220 210 200 190
Structure 5
Folding bases 1 to 235 of 26Mar01-00-05-10
Initial ΔG = -70.90
10 20
.-UCAAA| .-AUG --- G
GAGUGCU GUAU G U
UUUACGA CGUG C G
\ -----^ \ --- AGG A
70 30
40
G- G U A
CUG UCAAGAG GU A
GAC AGUUUUU CG A
GA A - A
60 50
80 90
.-CC A GA U G
GGCAGC GAGA CC GAAAAA C
UUGUCG CUUU GG CUUUUU A
\ -- A AA U A
120 110 100
130 140 150 160 170 180
UCCAAACUCA G CU- C G UG G A U
AUAA UAUCUU AG AAGAGG AAUAGG G AAAAAA AAAGAGAU U
UAUU AUAGAA UC UUCUUC UUGUUC C UUUUUU UUUCUUUG C
UC-------- G UUU - G GU A C G
230 220 210 200 190
Structure 6
Folding bases 1 to 235 of 26Mar01-00-05-10
Initial ΔG = -70.60
10
.-UCAAA U
GAGU--GC A
CUCA UG U
\ ----- \ G
130
20 30 40
A U .-AG| - .-U A
UGG GACGG UGC GCUGG CA G
ACC UUGUC ACG CGGCC GU A
A U \ --^ A \ - G
120 80
50 60
UAAAA G
GCUUUUU A
CGAGAGA A
UUUA- C
70
90
-- GA U G
GAGA CC GAAAAA C
CUUU GG CUUUUU A
GA AA U A
110 100
140 150 160 170 180
A- G CU- C G UG G A U
AUAA UAUCUU AG AAGAGG AAUAGG G AAAAAA AAAGAGAU U
UAUU AUAGAA UC UUCUUC UUGUUC C UUUUUU UUUCUUUG C
UC G UUU - G GU A C G
230 220 210 200 190
mfold version 3.6M. Zuker, Rensselaer Polytechnic Institute