RNA folding results on 26Apr21-11-52-00 for 138.38.194.217
Structure 1
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -105.40
M. Zuker, Rensselaer Polytechnic Institute
Initial ΔG = -105.40
10 20 30 40 50 60 70 80 90 100 110 120 130
cagcau a--------- u ugaucaug gc- aua gcauc .-aacaaa a gaauuggug u .-auauauauguaaaag| ga
uggu uuguaag uuuggcu auauca auuaauu uaucu cuguac auauc cuau uucucc uuauuuaaau gaaa g
acca aauauuu aaacuga uguagu ugauuga augga gacaug uaugg ggua aagagg aauagauuua cuuu a
ac---- acuagaaaaa - -------- aaa aaa a---- \ ------ a auucaaua- u \ ---------------^ aa
. 500 490 480 470 460 450 220 210 200
140 150 160
aaaagaaua ag u caa uu
gg gugaa cagu gu \
uc uacuu guua ca c
caa------ ga u aaa uu
190 180
230 240 250 260 270 280 290 300 310
aaua .-aaaaguaaauuac cuauu u .-cgauau ca -------- c
auuug uuagg gauuguu--ucca gguaa ugguuuuuu uuaguag gacucu u
uaaac aaucc uuagcaa aggu uuauu accaaaaga aaucguc cugagg a
a--- \ ------------- caggu \ - \ ------ -- uacaugaa a
420 380 340 330 320
350
uaca aag
uuuucuggag \
aggagauuuc a
uuc- auu
370
390 400
caaggg u
gaaguugg a
cuuuaauu a
a----- a
410
430
a gu
cuc a
gag a
g aa
440
Structure 2
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -105.30
10 20 30 40 50 60 70 80
cagcau a--------- u ugaucaug gc- aua gcauc .-aacaaaauau ug
uggu uuguaag uuuggcu auauca auuaauu uaucu cuguac cacua \
acca aauauuu aaacuga uguagu ugauuga augga gacaug guggu a
ac---- acuagaaaaa - -------- aaa aaa a---- \ ---------- ua
. 500 490 480 470 460 450 90
100 110 120 130
u .-auauauauguaaaag ga
--uucucc uuauuuaaau gaaa g
aagagg aauagauuua cuuu a
\ u \ --------------- aa
210 200
140 150 160
aaaagaaua ag u caa uu
gg gugaa cagu gu \
uc uacuu guua ca c
caa------ ga u aaa uu
190 180
220 230 240 250 260 270 280 290 300 310
.-auaacuuaa a au- aa ag| a ua a ga uu u .-cgauau ca -------- c
ugg ggu aau uuugaaa uaa uuacu ggcu uu uug ucca gguaa ugguuuuuu uuaguag gacucu u
auc cca uua aaacuuu auu aaugg uuga gg aac aggu uuauu accaaaaga aaucguc cugagg a
\ --------- - ggu gc a-^ a -- a gg -- - \ ------ -- uacaugaa a
420 410 400 390 380 340 330 320
350
uaca aag
uuuucuggag \
aggagauuuc a
uuc- auu
370
430
aa----- gu
cuc a
gag a
auaaacg aa
440
Structure 3
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -105.00
.-ca| uug
gca \
ugu g
\ --^ uau
10
20 30 40 50 60 70 80 90 100 110 120 130
aaguuu c .-aug gc- aua gcauc .-aacaaa a gaauuggug u .-auauauauguaaaag ga
ugg uugauc auauca auuaauu uaucu cuguac auauc cuau uucucc uuauuuaaau gaaa g
acc aacuag uguagu ugauuga augga gacaug uaugg ggua aagagg aauagauuua cuuu a
ac---- - \ --- aaa aaa a---- \ ------ a auucaaua- u \ --------------- aa
510 500 480 470 460 450 220 210 200
140 150 160
aaaagaaua ag u caa uu
gg gugaa cagu gu \
uc uacuu guua ca c
caa------ ga u aaa uu
190 180
230 240 250 260 270 280 290 300 310
aaua .-aaaaguaaauuac cuauu u .-cgauau ca -------- c
auuug uuagg gauuguu--ucca gguaa ugguuuuuu uuaguag gacucu u
uaaac aaucc uuagcaa aggu uuauu accaaaaga aaucguc cugagg a
a--- \ ------------- caggu \ - \ ------ -- uacaugaa a
420 380 340 330 320
350
uaca aag
uuuucuggag \
aggagauuuc a
uuc- auu
370
390 400
caaggg u
gaaguugg a
cuuuaauu a
a----- a
410
430
a gu
cuc a
gag a
g aa
440
490
agucaaa a
uuu u
aaa a
aa----- a
Structure 4
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -104.30
10 20 30 40 50 60 70 80
cagcau a--------- u ug ga c .-auu| - g ccu .-acaacaaaauau ug
uggu uuguaag uuuggcu aucau uau agc aauuau auaucu cau gu cacua \
acca aauauuu aaacuga uagua aug uug uuaaua uaugga gua ca guggu a
ac---- acuagaaaaa - ug a- a \ ---^ a g auu \ ------------ ua
. 500 490 480 470 230 220 90
100 110 120 130
--- u .-auauauauguaaaag ga
uucucc uuauuuaaau gaaa g
aagagg aauagauuua cuuu a
aua u \ --------------- aa
210 200
140 150 160
aaaagaaua ag u caa uu
gg gugaa cagu gu \
uc uacuu guua ca c
caa------ ga u aaa uu
190 180
240 250 260 270 280 290 300 310
ugaaaaguaaa ag--- .-gauuguu u .-cgauau ca -------- c
uuacuu gcuauu ucca gguaa ugguuuuuu uuaguag gacucu u
aaugga ugauaa aggu uuauu accaaaaga aaucguc cugagg a
aaa-------- agaca \ ------- - \ ------ -- uacaugaa a
460 450 380 340 330 320
350
uaca aag
uuuucuggag \
aggagauuuc a
uuc- auu
370
390 400
.-ca g-- guaaauu
aggg aaguug a
uccc uuuagc a
\ -- agg aaacuuu
420 410
430
aaa gu
cuc a
gag a
acg aa
440
Structure 5
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -104.00
.-ca uug
gca \
ugu g
\ -- uau
10
20 30 40 50 60 70 80
aaguuu c .-augauauc .-auu - g ccu .-acaacaaaauau ug
ugg uugauc agc aauuau auaucu cau gu cacua \
acc aacuag ucg uuaaua uaugga gua ca guggu a
ac---- - \ -------- \ --- a g auu \ ------------ ua
510 500 230 220 90
100 110 120 130
--- u .-auauauauguaaaag ga
uucucc uuauuuaaau gaaa g
aagagg aauagauuua cuuu a
aua u \ --------------- aa
210 200
140 150 160
aaaagaaua ag u caa uu
gg gugaa cagu gu \
uc uacuu guua ca c
caa------ ga u aaa uu
190 180
240
ugaa| a
aagua \
uucau a
ga--^ u
250
260 270 280 290 300 310
a------------ uu ca- g .-gauau ca -------- c
uugauug uc ug uaac ugguuuuuu uuaguag gacucu u
aacugau ag au auug accaaaaga aaucguc cugagg a
aaaaaaauauuua gu uaa g \ ----- -- uacaugaa a
490 480 470 340 330 320
350 360
uac-- .-ga a
auuuucug gaag u
uggaagac uuuc u
aaaaa \ -- a
460
370 380 390 400
agaggacuu .-gaca g-- guaaauu
uuauuug aggg aaguug a
gauaaac uccc uuuagc a
au------- \ ---- agg aaacuuu
450 420 410
430
aaa gu
cuc a
gag a
g-- aa
440
Structure 6
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -103.80
.-ca uug
gca \
ugu g
\ -- uau
10
20 30
aaguuu c .-a a
ugg uugauc ug u
acc aacuag ac a
ac---- - \ - u
510 500 40
50 60 70 80
gcauuaa uau---- cug - .-aaaauau ug
uuaua cugcauc uac aac cacua \
aauau gauguag aug uug guggu a
aaaaa-- uuaaacu uaa a \ ------- ua
490 480 470 90
100 110 120 130
u .-auauauauguaaaag ga
--uucucc uuauuuaaau gaaa g
aagagg aauagauuua cuuu a
\ u \ --------------- aa
210 200
140 150 160
aaaagaaua ag u caa uu
gg gugaa cagu gu \
uc uacuu guua ca c
caa------ ga u aaa uu
190 180
220 230 240 250 260 270 280 290 300 310
aua--| .-aa a au- aa ag a ua a ga uu u .-cgauau ca -------- c
acuu ugg ggu aau uuugaaa uaa uuacu ggcu uu uug ucca gguaa ugguuuuuu uuaguag gacucu u
ugga auc cca uua aaacuuu auu aaugg uuga gg aac aggu uuauu accaaaaga aaucguc cugagg a
aaaaa^ \ -- - ggu gc a- a -- a gg -- - \ ------ -- uacaugaa a
460 420 410 400 390 380 340 330 320
350
uaca aag
uuuucuggag \
aggagauuuc a
uuc- auu
370
430
aa------------ gu
cuc a
gag a
agacaugauaaacg aa
450 440
Structure 7
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -103.10
10 20 30 40 50 60 70 80
cagcau a--------- u ugaucaug gc- aua gcauc .-aacaaaauau ug
uggu uuguaag uuuggcu auauca auuaauu uaucu cuguac cacua \
acca aauauuu aaacuga uguagu ugauuga augga gacaug guggu a
ac---- acuagaaaaa - -------- aaa aaa a---- \ ---------- ua
. 500 490 480 470 460 450 90
100 110 120 130
u .-auauauauguaaaag ga
--uucucc uuauuuaaau gaaa g
aagagg aauagauuua cuuu a
\ u \ --------------- aa
210 200
140 150 160
aaaagaaua ag u caa uu
gg gugaa cagu gu \
uc uacuu guua ca c
caa------ ga u aaa uu
190 180
220 230 240 250 260 270 280 290 300 310
.-auaacuuaa a au- aa ag a .-uuagg u-- g u uaacgauau ca -------- c
ugg ggu aau uuugaaa uaa uuac cua ugauu uuucca gg ugguuuuuu uuaguag gacucu u
auc cca uua aaacuuu auu aaug gau auuag agaggu cu accaaaaga aaucguc cugagg a
\ --------- - ggu gc a- a \ ----- uuc a - uuuacau-- -- uacaugaa a
420 410 400 360 350 340 330 320
370 380
ag| ua g
gacuuu uuu g
uugaag gaa a
g-^ gg c
390
430
aa----- gu
cuc a
gag a
auaaacg aa
440
Structure 8
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -102.60
10 20 30 40 50 60 70 80
cagcau a--------- u ug .-ga .-auuaauua g ccu .-acaacaaaauau ug
uggu uuguaag uuuggcu aucau uaucagc uauaucu cau gu cacua \
acca aauauuu aaacuga uagua augguug auaugga gua ca guggu a
ac---- acuagaaaaa - ug \ -- \ -------- g auu \ ------------ ua
. 500 490 480 400 230 220 90
100 110 120 130
--- u .-auauauauguaaaag ga
uucucc uuauuuaaau gaaa g
aagagg aauagauuua cuuu a
aua u \ --------------- aa
210 200
140 150 160
aaaagaaua ag u caa uu
gg gugaa cagu gu \
uc uacuu guua ca c
caa------ ga u aaa uu
190 180
240 250 260
auaa- aa- .-uuacuuag u uu
uuug aaguaaa gcuau ga \
gaac uuuauuu uggua cu g
aaggg agg \ -------- c uu
390 380 270
280 290 300 310
.-aacgauau ca -------- c
ugguuuuuu uuaguag gacucu u
accaaaaga aaucguc cugagg a
\ -------- -- uacaugaa a
340 330 320
350
uaca aag
uuuucuggag \
aggagauuuc a
uc-- auu
370
410 420 430
a-| caa ga g ccuaaa- gu
auuaauuu ac uuug ac cuc a
ugauugaa ug agac ug gag a
aa^ aaa ga a auaaacg aa
470 460 450 440
Structure 9
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -102.50
10 20 30 40 50 60 70 80 90 100 110 120 130
cagcau a--------- u ugaucaug gc- aua gcauc .-aacaa --- .-aauuggug u .-auauauauguaaaag ga
uggu uuguaag uuuggcu auauca auuaauu uaucu cuguac aauauc acuaug uucucc uuauuuaaau gaaa g
acca aauauuu aaacuga uguagu ugauuga augga gacaug uuauag ugguac aagagg aauagauuua cuuu a
ac---- acuagaaaaa - -------- aaa aaa a---- \ ----- caa \ -------- u \ --------------- aa
. 500 490 480 470 460 450 280 210 200
140 150 160
aaaagaaua ag u caa uu
gg gugaa cagu gu \
uc uacuu guua ca c
caa------ ga u aaa uu
190 180
220 230 240
auaac--| aggua - aa
uuaaugg uaa uaauuug \
aguuauc auu auuaaau a
cuuuguu^ gg--- c ga
270 260 250
290 300 310
ca -------- c
--gguuuuuu uuaguag gacucu u
ccaaaaga aaucguc cugagg a
\ -- uacaugaa a
340 330 320
350
.-auaca aag
uuuucuggag \
aggagauuuc a
\ ----- auu
370
380 390 400
cuuu .-gaca g-- guaaauu
uauuug aggg aaguug a
auaaac uccc uuuagc a
---- \ ---- agg aaacuuu
420 410
430
aaa gu
cuc a
gag a
g-- aa
440
Structure 10
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -102.20
10 20 30
.-c auu uug ag .-g u ca
agc ggua ua uuuu gcu gau u
ucg ucau au aaag cga cua g
\ - gau uaa ga \ - - ua
250 240 40
50 60 70 80
auu - g ccu .-acaacaaaauau ug
aauuau auaucu cau gu cacua \
uuaaua uaugga gua ca guggu a
u-- a g auu \ ------------ ua
230 220 90
100 110 120 130
--- u .-auauauauguaaaag ga
uucucc uuauuuaaau gaaa g
aagagg aauagauuua cuuu a
aua u \ --------------- aa
210 200
140 150 160
aaaagaaua ag u caa uu
gg gugaa cagu gu \
uc uacuu guua ca c
caa------ ga u aaa uu
190 180
260 270 280 290 300 310
a----| .-g u uaacgauau ca -------- c
uugauu uuucca gg ugguuuuuu uuaguag gacucu u
aacuag agaggu cu accaaaaga aaucguc cugagg a
acacc^ \ - - uuuacau-- -- uacaugaa a
510 500 350 340 330 320
360 370 380 390 400
a-------------- u gag--- .-gaca g-- guaaauu
gauuac uua gacuuu--uauuug aggg aaguug a
cugaug agu uugaaa auaaac uccc uuuagc a
aaaaaaauauuuaaa u aaauga \ \ ---- agg aaacuuu
490 480 470 420 410
430
aaa gu
cuc a
gag a
g-- aa
440
450
g ag
uac \
aug a
a ga
460
Structure 11
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -101.40
10 20 30 40 50 60 70 80 90 100 110 120 130
cagcau a--------- u ugaucaug gc- aua gcauc .-aacaaa a gaauuggug u .-auauauauguaaaag ga
uggu uuguaag uuuggcu auauca auuaauu uaucu cuguac auauc cuau uucucc uuauuuaaau gaaa g
acca aauauuu aaacuga uguagu ugauuga augga gacaug uaugg ggua aagagg aauagauuua cuuu a
ac---- acuagaaaaa - -------- aaa aaa a---- \ ------ a auucaaua- u \ --------------- aa
. 500 490 480 470 460 450 220 210 200
140 150 160
aaaagaaua ag u caa uu
gg gugaa cagu gu \
uc uacuu guua ca c
caa------ ga u aaa uu
190 180
230 240 250 260 270 280 290 300 310
aaua .-aaaaguaaauuac cuauu .-u aug aac uu .-cauuaguag c
auuug uuagg gauuguu cc gu gaua gguuuuuu gacucu u
uaaac aaucc uuagcaa gg ca uuau ucaggaga cugagg a
a--- \ ------------- caggu \ - gaa ggu uu \ --------- a
420 390 380 370
320 330 340
a-| c g aa cca
agua aucu cu agaaaa \
ucau uaga ga ucuuuu u
uu^ - a gg aca
360 350
400
- u
gaaguugg a
cuuuaauu a
a a
410
430
a gu
cuc a
gag a
g aa
440
Structure 12
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -101.20
10 20 30 40 50 60 70 80
cagcau .-a| agu g gauc .-ua c auua g ccu .-acaacaaaauau ug
uggu uugua uuug cuu auga ucag auua uauaucu cau gu cacua \
acca gacau aaac gag ugcu aguu uaau auaugga gua ca guggu a
ac---- \ -^ gau g aaaa \ -- - a--- g auu \ ------------ ua
. 450 440 230 220 90
100 110 120 130
--- u .-auauauauguaaaag ga
uucucc uuauuuaaau gaaa g
aagagg aauagauuua cuuu a
aua u \ --------------- aa
210 200
140 150 160
aaaagaaua ag u caa uu
gg gugaa cagu gu \
uc uacuu guua ca c
caa------ ga u aaa uu
190 180
240 250 260 270 280 290 300 310
aaaguaaauuac cuauu u .-cgauau ca -------- c
uuagg gauuguu--ucca gguaa ugguuuuuu uuaguag gacucu u
aaucc uuagcaa aggu uuauu accaaaaga aaucguc cugagg a
ca---------- caggu \ - \ ------ -- uacaugaa a
430 420 380 340 330 320
350
uaca aag
uuuucuggag \
aggagauuuc a
uuc- auu
370
390 400
caaggg u
gaaguugg a
cuuuaauu a
a----- a
410
460 470 480
aa aaaaag a ga u
ggu uu guaaau ug a
cua aa uauuua ac g
a- gaaaa- a a- u
500 490
Structure 13
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -100.70
10 20 30 40
cagcau .-a uuuu ca a uuaauu
uggu uuguaag ggcuugau ugau uca--gca \
acca aacauuc uugaacug acua agu cgu a
ac---- \ - u--- -- - \ cuauau
. 170 160
60 70 80
a- .-acaacaaaauau ug
uccugu cacua \
aggaua guggu a
gg \ ------------ ua
150 90
100 110
-----------| c a- a u
uucuc uuu uuua aua a
aagag aag aaau uau u
agaaaacuuua^ a ga g a
140 130 120
180 190 200 210 220 230 240
a-------------------- uu a- .-a u .-ga c aggua - aa
auug ucau gcuaac uuuaga aaug gaaauaa uuaaugg uaa uaauuug \
ugau agua ugauug aggucu uuac cuuuguu aguuauc auu auuaaau a
acuagaaaaaaauauuuaaac gu aa \ - u \ -- - gg--- c ga
500 490 480 470 350 270 260 250
280 290 300 310
caugguaacgauau ca -------- c
ugguuuuuu uuaguag gacucu u
accaaaaga aaucguc cugagg a
au------------ -- uacaugaa a
340 330 320
360 370 380 390 400
gaaga agagg uuu .-gaca g-- guaaauu
uuacuuu acu auuug aggg aaguug a
aauggaa uga uaaac uccc uuuagc a
aaa-- gaca- --- \ ---- agg aaacuuu
460 450 420 410
430
aaa gu
cuc a
gag a
g-- aa
440
Structure 14
Folding bases 1 to 510 of 26Apr21-11-52-00
Initial ΔG = -100.70
10 20 30
.-c auu uug ag .-g u ca
agc ggua ua uuuu gcu gau u
ucg ucau au aaag cga cua g
\ - gau uaa ga \ - - ua
250 240 40
50 60 70 80
auu - g ccu .-acaacaaaauau ug
aauuau auaucu cau gu cacua \
uuaaua uaugga gua ca guggu a
u-- a g auu \ ------------ ua
230 220 90
100 110 120 130
--- u .-auauauauguaaaag ga
uucucc uuauuuaaau gaaa g
aagagg aauagauuua cuuu a
aua u \ --------------- aa
210 200
140 150 160
aaaagaaua ag u caa uu
gg gugaa cagu gu \
uc uacuu guua ca c
caa------ ga u aaa uu
190 180
260 270
.-auug ucc
auuguu a
uagcaa u
\ ---- ugg
280
290 300 310
a---- .-cauuaguag c
uugguuuuuu gacucu u
aacuagaaaa cugagg a
acacc \ --------- a
510 500
320 330 340 350
aag----------- ---| agaaa- .-auaca aag
uacauc ugcuaa acc uuuucuggag \
auguag augauu ugg aggagauuuc a
aaauauuuaaacug uaa^ gaaaaa \ ----- auu
490 480 470 460 370
380 390 400
cuu---- .-gaca g-- guaaauu
uuauuug aggg aaguug a
gauaaac uccc uuuagc a
aagacau \ ---- agg aaacuuu
450 420 410
430
aaa gu
cuc a
gag a
g-- aa
440
mfold version 3.6M. Zuker, Rensselaer Polytechnic Institute