RNA folding results on 3 prime UTR of N gene for 73.152.135.96
Initial ΔG = -45.30
10
.-UUAA A--| GA
UUGCU GC A
AACGA CG A
\ ---- GAA^ UA
20
30 40 50
AGACGAAAACAU .-CACAC - A
GC AUGAG GAAU C
CG UACUC CUUA C
UU---------- \ ----- U G
190 70 60
80 90 100
UAACA .-AGGCCA ----- AAA
UAUUC GUUAUCUGGG CUU A
AUGAG CAAUAGACCC GAA G
A---- \ ------ AACCU GAC
120 110
130 140 150
GAUCAUAUACAUG UCCA - U
GUUCUC GAG GUUCA U
UAAGAG CUC CAAGU A
CAA---------- CCUG A C
180 170 160
Structure 2
Folding bases 1 to 192 of 3 prime UTR of N gene
Initial ΔG = -45.30
10 20
UUAAUU A .-GAAAA A
GCU GC UGC A
CGA UG ACG G
UU---- A \ ----- A
190
30 40 50
AAGA| .-AAAA .-CCACAC - A
CG CAUG AUGAG GAAU C
GC GUAC UACUC CUUA C
A---^ \ ---- \ ------ U G
70 60
80 90 100
UAACAUAUUCAGGCCA ----- AAA
GUUAUCUGGG CUU A
CAAUAGACCC GAA G
AUAUACUAG------- AACCU GAC
130 120 110
140 150
-- UCCA - U
GUUCUC GAG GUUCA U
UAAGAG CUC CAAGU A
AA CCUG A C
180 170 160
Structure 3
Folding bases 1 to 192 of 3 prime UTR of N gene
Initial ΔG = -44.80
10
.-UUAA UAGC
UUGC G
AACG A
\ ---- UAAA
20
30 40 50
| .-AAAGACGAAAACAUGCCACAC - A
GAGC AUGAG GAAU C
UUCG UACUC CUUA C
^ \ --------------------- U G
190 70 60
80 90 100
UAACA .-AGGCCA ----- AAA
UAUUC GUUAUCUGGG CUU A
AUGAG CAAUAGACCC GAA G
A---- \ ------ AACCU GAC
120 110
130 140 150
GAUCAUAUACAUG UCCA - U
GUUCUC GAG GUUCA U
UAAGAG CUC CAAGU A
CAA---------- CCUG A C
180 170 160
Structure 4
Folding bases 1 to 192 of 3 prime UTR of N gene
Initial ΔG = -44.20
10 20
UUAAUU A .-GAAAA A
GCU GC UGC A
CGA UG ACG G
UU---- A \ ----- A
190
30 40 50
AA---------- .-AAACAUGCCACAC - A
GACGA AUGAG GAAU C
CUGCU UACUC CUUA C
AGCAAUAAGAGC \ ------------- U G
180 170 70 60
80 90 100
UAACAUA| .-GCCA ----- AAA
UUCAG GUUAUCUGGG CUU A
AAGUC CAAUAGACCC GAA G
CAC----^ \ ---- AACCU GAC
160 120 110
130 140
GAUCAUAUAC UU U
AUGG CUC C
UACU GAG C
AU-------- UG A
150
Structure 5
Folding bases 1 to 192 of 3 prime UTR of N gene
Initial ΔG = -43.50
10
.-UUAA A-- GA
UUGCU GC A
AACGA CG A
\ ---- GAA UA
20
30 40 50
.-AGACGAAAACAUGCCACAC - A
AUGAG GAAU C
UACUC CUUA C
\ ------------------- U G
70 60
80 90 100
UAACAUAUUC .-CA ----- AAA
AGGC GUUAUCUGGG CUU A
UUCG CAAUAGACCC GAA G
---------- \ -- AACCU GAC
190 120 110
130 140 150
GAUCAUA| AUG-- UCCA - U
UAC GUUCUC GAG GUUCA U
AUG UAAGAG CUC CAAGU A
A------^ AGCAA CCUG A C
180 170 160
Structure 6
Folding bases 1 to 192 of 3 prime UTR of N gene
Initial ΔG = -43.20
10
.-UUAA UAGC
UUGC G
AACG A
\ ---- UAAA
20
30 40
.-AA C .-AA| CC
GAGC AGA GAA CAUG \
UUCG UCU CUU GUAC A
\ -- - \ --^ AC
190 50
A- A
GG A
CC U
AG A
60
70 80 90 100
CAUUAACA .-AGGCCA ----- AAA
UAUUC GUUAUCUGGG CUU A
AUGAG CAAUAGACCC GAA G
A------- \ ------ AACCU GAC
120 110
130 140 150
GAUCAUAUACAUG UCCA - U
GUUCUC GAG GUUCA U
UAAGAG CUC CAAGU A
CAA---------- CCUG A C
180 170 160
Structure 7
Folding bases 1 to 192 of 3 prime UTR of N gene
Initial ΔG = -43.10
10
.-UUAA A-- GA
UUGCU GC A
AACGA CG A
\ ---- GAA UA
20
30 40 50
AGACGAAAACAU .-CACAC - A
GC AUGAG GAAU C
CG UACUC CUUA C
UU---------- \ ----- U G
190 70 60
80 90 100
UAACA .-AG| ----------- ----- AAA
UAUUC GCCA GUUAUCUGGG CUU A
AUGAG UGGU CAAUAGACCC GAA G
A---- \ --^ ACAUAUACUAG AACCU GAC
140 130 120 110
150
----- UCCA - U
UCUC GAG GUUCA U
AGAG CUC CAAGU A
CAAUA CCUG A C
180 170 160
mfold version 3.6M. Zuker, Rensselaer Polytechnic Institute