Structure 1 Folding bases 1 to 52 of 26Mar01-00-30-45
Initial ΔG = -15.80

           10        20     
   -     G--|  G       U  A 
CGG AGUGC   CUG UCAAGAG GU A
GCC UUACG   GAC AGUUUUU CG A
   U     AGA^  A       -  A 
 50        40        30     


 

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Structure 2 Folding bases 1 to 52 of 26Mar01-00-30-45
Initial ΔG = -15.40

          10     
    .-G|     GGU 
CGGA   UGCGCU   \
GCCU   AUGUGA   C
    \ -^     GAA 
 50       20     


          30      
      AAA       G 
         GCUUUUU A
         CGAGAGA A
      UUA       C 
             40   


 

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mfold version 3.6
M. Zuker, Rensselaer Polytechnic Institute