RNA folding results on 26Apr20-05-44-46 for 150.46.200.29
Initial ΔG = -27.40
10
------- .-UC| UUUU
AAAACAUC CC A
UUUUGUAG GG U
GCGAUAG \ --^ UAAU
90 80 20
30 40
- UC G --- UAU
CCGG GGGUCCA AU AUUCG \
GGCC UUCGGGU UG UGAGC C
A UC G AGA UGU
70 60 50
Structure 2
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -26.20
10 20 30
------- .-C| AA C - UCC
AAAACAUCUCC UUUUAUU UGGC GGU CGGG A
UUUUGUAGAGG GAGAUGA GCUG CUA GCUU G
GCGAUAG \ -^ -- U U AUA
90 80 60 50 40
UGU C
GGG U
CCU U
--- C
70
Structure 3
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -26.10
10 20
------- .-C .-AAU| GG
AAAACAUCUCC UUUUAUU GGCC \
UUUUGUAGAGG GAGAUGA CUGG U
GCGAUAG \ - \ ---^ GC
90 80 60 30
40
--- U
CAGAUA U
GUCUAU C
GCU G
50
UGU C
GGG U
CCU U
--- C
70
Structure 4
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -25.60
10
------- .-CUU| U
AAAACAUCUCC UUA U
UUUUGUAGAGG GGU A
GCGAUAG \ ---^ A
90 80 20
30 40
CC UC G --- UAU
GG GGGUCCA AU AUUCG \
CC UUCGGGU UG UGAGC C
-- UC G AGA UGU
70 60 50
Structure 5
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -25.10
10 20
------- .-CUUUUAUUAAU GG
AAAACAUCUCC GGCC \
UUUUGUAGAGG CUGG U
GCGAUAG \ ----------- GC
90 80 30
40
U
--CAGAUA U
GUCUAU C
\ G
50
60
UC| UA G
GAG GAGU U
CUC UUCG G
C-^ -- G
70
Structure 6
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -25.00
10
------- .-UC UUUU
AAAACAUC CC A
UUUUGUAG GG U
GCGAUAG \ -- UAAU
90 80 20
30 40 50
- UC GA GUAU| G
CCGG GGGUCCA UAUUC CU U
GGCC UUCGGGU GUGAG GA C
A UC -- AU--^ G
70 60
Structure 7
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -24.40
10 20
------- .-CUUU| .-AA - GG
AAAACAUCUCC UAUU UGG CC \
UUUUGUAGAGG GUGA ACC GG U
GCGAUAG \ ----^ \ -- U GC
90 80 60 30
40
GA UAU
UAUUCG \
AUGAGC C
G- UGU
50
U C
GGG U
CCU U
- C
70
Structure 8
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -23.40
10 20 30 40
------- .-CUUUUAUUAAUGGCCGG| GUC U
AAAACAUCUCC UCGG CAGAUA U
UUUUGUAGAGG AGCU GUCUAU C
GCGAUAG \ -----------------^ --- G
90 80 50
60
GUAGAGUGU C
GGG U
CCU U
--------- C
70
Structure 9
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -23.40
10 20 30 40
------- .-CUUUUAUUAAUGGC| G GGG -- U
AAAACAUCUCC CG UC UC CAGAUA U
UUUUGUAGAGG GU AG AG GUCUAU C
GCGAUAG \ --------------^ G AUG CU G
90 80 60 50
U C
GGG U
CCU U
- C
70
Structure 10
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -23.20
10 20 30 40
------- CUUUUAUUAAU| G -------- GUC U
AAAACAUCUCC GGCC G UCGG CAGAUA U
UUUUGUAGAGG UCGG U AGCU GUCUAU C
GCGAUAG CCUCU------^ G GUGAGAUG --- G
90 80 70 60 50
Structure 11
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -23.00
10 20 30 40
------- .-CUUU AAUG| - U CCA AU
AAAACAUCUCC UAUU GC CGG CGGGU G \
UUUUGUAGAGG GUGA UG GCU GUCUA C A
GCGAUAG \ ---- GA--^ A - UG- UU
90 80 60 50
U C
GGG U
CCU U
- C
70
Structure 12
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -22.90
10 20
------- .-CUUUU| AAU
AAAACAUCUCC AUU \
UUUUGUAGAGG UGG G
GCGAUAG \ -----^ CCG
90 80
30 40
C--- G --- UAU
GGGUCCA AU AUUCG \
UUCGGGU UG UGAGC C
CCUC G AGA UGU
70 60 50
Structure 13
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -22.90
10 20 30 40
AAAACAUCUCCCUU| UGG---- UC G --- UAU
UUAUUAA CCGG GGGUCCA AU AUUCG \
GAUAGUU GGCC UUCGGGU UG UGAGC C
GC------------^ UUGUAGA UC G AGA UGU
90 80 70 60 50
Structure 14
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -22.90
10 20
------- .-CUUUUAUUAAU GG
AAAACAUCUCC GGCC \
UUUUGUAGAGG CUGG U
GCGAUAG \ ----------- GC
90 80 30
40 50
C-| UA UA- UC
AGA UUCG UCUG \
UCU GGGU AGAU G
CC^ UC GUG GA
70 60
Structure 15
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -22.70
10 20
------- | .-UUAUUAAU GG
AAAACAUCUCC--CUU GGCC \
UUUUGUAGAGG GAG CUGG U
GCGAUAG \ ^ \ -------- GC
90 80 30
40
-- U
CAGAUA U
GUCUAU C
CU G
50
60
UAGAGUGU C
GGG U
CCU U
-------- C
70
Structure 16
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -22.20
10 20 30 40
AAAACAUCUCC U UUA-| GG UC G --- UAU
CU UUA AU CCGG GGGUCCA AU AUUCG \
GA AGU UA GGCC UUCGGGU UG UGAGC C
GC--------- U UUUG^ GA UC G AGA UGU
90 80 70 60 50
Structure 17
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -22.10
10 20
------- .-CUUU| AA - GG
AAAACAUCUCC UAUU UGG CC \
UUUUGUAGAGG AUAG ACC GG U
GCGAUAG \ ----^ -- U GC
90 80 40 30
50 60
UUCGUAUCUGUC UA G
GAG GAGU U
CUC UUCG G
C----------- -- G
70
Structure 18
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -21.30
10 20
------- CUUUUA--| .-A - GG
AAAACAUCUCC UUA UGG CC \
UUUUGUAGAGG GGU ACC GG U
GCGAUAG CCUCUUCG^ \ - U GC
90 80 70 30
40
GA--- UAU
UAUUCG \
AUGAGC C
GUGAG UGU
60 50
Structure 19
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -21.20
10 20 30 40
.-AAAACAUCUCCCUUUUAUUAAUGG UC G --- UAU
CCGG GGGUCCA AU AUUCG \
GGCC UUCGGGU UG UGAGC C
\ ------------------------ UC G AGA UGU
70 60 50
80
AGAU| UU
GUU \
CGA G
G---^ UA
90
Structure 20
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -20.70
10
AAAAC| .-UC UUUU
AUC CC A
UAG GG U
GCGA-^ \ -- UAAU
90 20
30 40
--------- UC G --- UAU
CCGG GGGUCCA AU AUUCG \
GGCC UUCGGGU UG UGAGC C
UUUUGUAGA UC G AGA UGU
80 70 60 50
Structure 21
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -20.20
10 20
------- .-CUUUUAUUAAU GG
AAAACAUCUCC GGCC \
UUUUGUAGAGG CUGG U
GCGAUAG \ ----------- GC
90 80 30
40
.-C U
AGAUA U
UCUAU C
\ - G
50
------| GAGUA
GUC G
CGG A
CCUCUU^ GUGUG
70 60
Structure 22
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -20.10
10 20
------- .-CUUU| UAA---- - GG
AAAACAUCUCC UAU UGG CC \
UUUUGUAGAGG AUG ACC GG U
GCGAUAG \ ----^ CUUAUAG U GC
90 80 40 30
50 60
UCUGUC UA G
GAG GAGU U
CUC UUCG G
C----- -- G
70
Structure 23
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -19.90
10 20 30
------- .-CUUUUAUUA| CCG GGG
AAAACAUCUCC AUGG GUC \
UUUUGUAGAGG UGCU UAG U
GCGAUAG \ ---------^ UA- ACC
90 80 40
50 60
AUCUGUC UA G
GAG GAGU U
CUC UUCG G
C------ -- G
70
Structure 24
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -18.90
| CAU
--AAAA C
UUUU U
\ ^ CCC
10
20 30 40
AUUA-------- GG UC G --- UAU
AU CCGG GGGUCCA AU AUUCG \
UA GGCC UUCGGGU UG UGAGC C
GCGAUAGUUUUG GA UC G AGA UGU
90 80 70 60 50
Structure 25
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -15.00
10 20
.-AAAACAUCUCCCUUUUAUUAA - GG
UGG CC \
ACC GG U
\ --------------------- U GC
30
40 50 60
GAUAUUCGUAU| UAGAGUG C
CUGUCGAG UGGG U
GAUAGUUU GCCU U
GC---------^ UGUAGAG C
90 80 70
Structure 26
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -14.90
10 20
.-AAA| U .-CCUUUUAUUAA - GG
ACA CUC UGG CC \
UGU GAG ACC GG U
\ ---^ - \ ----------- U GC
60 30
40
GA UAU
UAUUCG \
AUGAGC C
-- UGU
50
------------------ C
GGG U
CCU U
GCGAUAGUUUUGUAGAGG C
90 80 70
Structure 27
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -14.80
10 20 30 40
AAAACAUCUCCCUUUUAUUAAUG CG| .-G G --- UAU
GC GUC GGUCCA AU AUUCG \
CG UAG UCGGGU UG UGAGC C
G---------------------- A-^ \ - G AGA UGU
90 60 50
70
------ C
UCU C
AGA G
UUUUGU G
80
Structure 28
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -14.30
10 20
.-AAA U .-CCUUUUAUUAA - GG
ACA CUC UGG CC \
UGU GAG ACC GG U
\ --- - \ ----------- U GC
60 30
40
GA UAU
UAUUCG \
AUGAGC C
-- UGU
50
70
GG| UC CG G
GCU UC GA A
CGA AG UU U
G-^ U- UU G
90 80
Structure 29
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -13.60
10 20 30 40
AAAACAUCUCCCUU U CG| ------- G --- UAU
UUAUUAA GGC GUC GGGUCCA AU AUUCG \
GAUAGUU UUG UAG UUCGGGU UG UGAGC C
GC------------ - --^ AGGCCUC G AGA UGU
90 80 70 60 50
Structure 30
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -11.90
10 20
.-AAAACAUCUCCCUUUUAUUAAU GG
GGCC \
CUGG U
\ ---------------------- GC
30
40
U
--CAGAUA U
GUCUAU C
\ G
50
60
U| AG-- UG ---- C
CG UAGAG U GGG U
GC GUUUU A CCU U
-^ GAUA GU GAGG C
90 80 70
Structure 31
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -11.80
10 20
AAAACAUCUCCCUU .-AU GG
UUAUUA GGCC \
GAUAGU CUGG U
GC------------ \ -- GC
90 30
40 50 60
C| CGUA UC UA G
AGAUAUU UCUG GAG GAGU U
UUUGUAG AGGC CUC UUCG G
-^ ---- -- -- G
80 70
Structure 32
Folding bases 1 to 92 of 26Apr20-05-44-46
Initial ΔG = -11.10
10 20
.-AAAACAUCUCCCUUUUAUUAA - GG
UGG CC \
ACC GG U
\ --------------------- U GC
30
40 50 60
GA-| ---- A UC UA G
UAUU CGU UCUG GAG GAGU U
AUAG GUA AGGC CUC UUCG G
GCG^ UUUU G -- -- G
90 80 70
mfold version 3.6M. Zuker, Rensselaer Polytechnic Institute