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Acknowledgment

We thank Bryn Weiser and Harry Noller for making the program XRNA available to us and we also thank Bryn Weiser for his support during the implementation of the new color annotation in XRNA. Jason Ginchereau created the ss file annotation and comparison programs. Darrin Stewart created the current program for displaying energy dot plots. The research was supported by grant number MCB316501 from the National Science Foundation and National Institutes of Health Grant 48702 to ABJ. MZ has been supported by grant number GM54250 from the National Institutes of Health.

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Michael Zuker Institute for Biomedical Computing Washington University in St. Louis August 21 1998.