1 is the 494330th nucleic acid sequence folded on the Amazon hosted mfold server. - Tuesday, April 21 11:58:24 UTC 2026 -

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Folding 1 at 37° C. (3.6)
[Na⁺] = 1.0 M,     [Mg⁺⁺] = 0.0 M, oligo correction
- Computed for 36.113.182.46 -

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Linear DNA folding at 5%, window = 2, max folds = 50 17 A's, 12 C's, 14 G's, 16 U/T's and 0 N's. 10 20 30 40 50 TCTAAATCGG TACACATCTG GGAGACTCTT AATACACAGG ACCTGGAGTC 60 AGGAGTTTT

Output

The energy dot plot for 1. (Definition)
File formats: Text, PostScript, pdf, png, jpg

Computed Structures:   (File Formats)
The computed foldings contain 10 base pairs out of 14 (71.4%) in the energy dot plot.

Extra files:   sorted ct file;   h-num values;   p-num values;   log file for main computations.

Download all foldings

Choose zipped file: or gzipped tar file:   PostScriptPDFpngjpgctViennaRNAMLRnaViz ctMac ct RNAdrawXRNA ss  

View ss-count information

(Definition)   (ss-count file)  ss value = 2.39 ± 1.07

Averaging window   13579 1113151719 25517599   Magnification   Base to magnify about   Plot format   PostScriptPDFpngjpg  

View Individual Structures:

Circular structure Plots

◈ Structure 1 : ΔG = -3.75 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 2 : ΔG = -3.70 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 3 : ΔG = -3.23 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

Dot plot folding comparisons for 1:
Image format: PostScriptpngjpg
Compare selected foldings:     1   2   3
     

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These computations were performed on ip-172-31-2-102 in 2 min. and 37.92 sec. and can be accessed at http://www.unafold.org/cgi-bin/view.cgi?26Apr21-11-58-13
The results will be erased in 6 hours..