aav is the 494361st nucleic acid sequence folded on the Amazon hosted mfold server. - Tuesday, April 21 12:00:04 UTC 2026 -

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Folding aav at 37° C. (3.6)
[Na⁺] = 1.0 M,     [Mg⁺⁺] = 0.0 M, oligo correction
- Computed for 180.167.29.134 -

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Linear DNA folding at 5%, window = 25, max folds = 50 534 A's, 681 C's, 709 G's, 474 U/T's and 0 N's. 10 20 30 40 50 cctgcaggca gctgcgcgct cgctcgctca ctgaggccgc ccgggcaaag 60 70 80 90 100 cccgggcgtc gggcgacctt tggtcgcccg gcctcagtga gcgagcgagc 110 120 130 140 150 gcgcagagag ggagtggcca actccatcac taggggttcc tgcggccgca 160 170 180 190 200 cgcgtTCCAG CTGCTCATCT GCAGGACAGA GCGCTTGACA ACCCATGAGA 210 220 230 240 250 GGAACTGTTG TAGGCGTAGC GAGGGAAACG AGGTGTGTTG TAGGCGTAGC 260 270 280 290 300 GAGGGAAACG AGGTGTGACG CGTGCAGGTT CCTATGCCAC CTGTGTGTTA 310 320 330 340 350 TGCCACCTGT GTGTGCCAAG TGTAACTTCG TGATTGGAGG AAACACTTGT 360 370 380 390 400 ATTTAAACAC GTAGCCTATA GCAATAAACG CCATTTGCCT CACTTACTCC 410 420 430 440 450 TGGGGTCTGG GTGAGCATCT GGCCCCGACC TGGTAAAGGG TCGGTTTCGC 460 470 480 490 500 gtctcCGTTA CATAACTTAC GGTAAATGGC CCGCCTGGCT GACCGCCCAA 510 520 530 540 550 CGACCCCCGC CCATTGACGT CAATAATGAC GTATGTTCCC ATAGTAACGC 560 570 580 590 600 CAATAGGGAC TTTCCATTGA CGTCAATGGG TGGAGTATTT ACGGTAAACT 610 620 630 640 650 GCCCACTTGG CAGTACATCA AGTGTATCAT ATGCCAAGTA CGCCCCCTAT 660 670 680 690 700 TGACGTCAAT GACGGTAAAT GGCCCGCCTG GCATTATGCC CAGTACATGA 710 720 730 740 750 CCTTATGGGA CTTTCCTACT TGGCAGTACA TCTACGTATT AGTCATCGCT 760 770 780 790 800 ATTACCATGG TGATGCGGTT TTGGCAGTAC ATCAATGGGC GTGGATAGCG 810 820 830 840 850 GTTTGACTCA CGGGGATTTC CAAGTCTCCA CCCCATTGAC GTCAATGGGA 860 870 880 890 900 GTTTGTTTTG GCACCAAAAT CAACGGGACT TTCCAAAATG TCGTAACAAC 910 920 930 940 950 TCCGCCCCAT TGACGCAAAT GGGCGGTAGG CGTGTACGGT GGGAGGTCTA 960 970 980 990 1000 TATAAGCAGA GCTttttggc aaagaatgtc gaccGCCACC ATGGTGAGCA 1010 1020 1030 1040 1050 AGGGCGAGGA GCTGTTCACC GGGGTGGTGC CCATCCTGGT CGAGCTGGAC 1060 1070 1080 1090 1100 GGCGACGTAA ACGGCCACAA GTTCAGCGTG TCCGGCGAGG GCGAGGGCGA 1110 1120 1130 1140 1150 TGCCACCTAC GGCAAGCTGA CCCTGAAGTT CATCTGCACC ACCGGCAAGC 1160 1170 1180 1190 1200 TGCCCGTGCC CTGGCCCACC CTCGTGACCA CCCTGACCTA CGGCGTGCAG 1210 1220 1230 1240 1250 TGCTTCAGCC GCTACCCCGA CCACATGAAG CAGCACGACT TCTTCAAGTC 1260 1270 1280 1290 1300 CGCCATGCCC GAAGGCTACG TCCAGGAGCG CACCATCTTC TTCAAGGACG 1310 1320 1330 1340 1350 ACGGCAACTA CAAGACCCGC GCCGAGGTGA AGTTCGAGGG CGACACCCTG 1360 1370 1380 1390 1400 GTGAACCGCA TCGAGCTGAA GGGCATCGAC TTCAAGGAGG ACGGCAACAT 1410 1420 1430 1440 1450 CCTGGGGCAC AAGCTGGAGT ACAACTACAA CAGCCACAAC GTCTATATCA 1460 1470 1480 1490 1500 TGGCCGACAA GCAGAAGAAC GGCATCAAGG TGAACTTCAA GATCCGCCAC 1510 1520 1530 1540 1550 AACATCGAGG ACGGCAGCGT GCAGCTCGCC GACCACTACC AGCAGAACAC 1560 1570 1580 1590 1600 CCCCATCGGC GACGGCCCCG TGCTGCTGCC CGACAACCAC TACCTGAGCA 1610 1620 1630 1640 1650 CCCAGTCCGC CCTGAGCAAA GACCCCAACG AGAAGCGCGA TCACATGGTC 1660 1670 1680 1690 1700 CTGCTGGAGT TCGTGACCGC CGCCGGGATC ACTCTCGGCA TGGACGAGCT 1710 1720 1730 1740 1750 GTACAAGctg tgccttctag ttgccagcca tctgttgttt gcccctcccc 1760 1770 1780 1790 1800 cgtgccttcc ttgaccctgg aaggtgccac tcccactgtc ctttcctaat 1810 1820 1830 1840 1850 aaaatgagga aattgcatcg cattgtctga gtaggtgtca ttctattctg 1860 1870 1880 1890 1900 gggggtgggg tggggcagga cagcaagggg gaggattggg aagacaatag 1910 1920 1930 1940 1950 caggcatgct ggggatgcgg tgggctctat ggACAGAGGA CGAACACCGG 1960 1970 1980 1990 2000 AAGAGCGAAC GGAGACTACA TGCAACAAGT GGTGACCCCG ACGTGATCTG 2010 2020 2030 2040 2050 TCTGCTGAGG GTAGCTGCCC GGCATGCCCG TGACGTGGAG AAGAGCCTGT 2060 2070 2080 2090 2100 GAGGTGGCGG CAGGTCGCGC ACGGAAGACG TATTGCGGTT AAGAGCCTGC 2110 2120 2130 2140 2150 GAGGTGGCGG CAGGTCGCAT ACGTAACAAT GGACCAAGTC ATTAAGGTAC 2160 2170 2180 2190 2200 TTGTGCAGTT TTGTAAGGAC TACTGTGGAA AATCTACTCC TTCCCGGAAG 2210 2220 2230 2240 2250 GAGATCGCGA CAGTTTTGTC GCTGTTAAAg gtaaccacgt gcggaccgag 2260 2270 2280 2290 2300 cggccgcagg aacccctagt gatggagttg gccactccct ctctgcgcgc 2310 2320 2330 2340 2350 tcgctcgctc actgaggccg ggcgaccaaa ggtcgcccga cgcccgggct 2360 2370 2380 2390 2400 ttgcccgggc ggcctcagtg agcgagcgag cgcgcagctg cctgcagg

Output

The energy dot plot for aav. (Definition)
File formats: Text, PostScript, pdf, png, jpg

Computed Structures:   (File Formats)
The computed foldings contain 3049 base pairs out of 215703 (1.4%) in the energy dot plot.

Extra files:   sorted ct file;   h-num values;   p-num values;   log file for main computations.

Download all foldings

Choose zipped file: or gzipped tar file:   PostScriptPDFpngjpgctViennaRNAMLRnaViz ctMac ct RNAdrawXRNA ss  

View ss-count information

(Definition)   (ss-count file)  ss value = 8.54 ± 9.10

Averaging window   13579 1113151719 25517599   Magnification   Base to magnify about   Plot format   PostScriptPDFpngjpg  

View Individual Structures:

Circular structure Plots

◈ Structure 1 : ΔG = -537.06 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 2 : ΔG = -536.58 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 3 : ΔG = -536.45 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 4 : ΔG = -536.13 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 5 : ΔG = -535.88 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 6 : ΔG = -535.27 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 7 : ΔG = -535.04 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 8 : ΔG = -534.77 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 9 : ΔG = -533.65 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 10 : ΔG = -533.26 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 11 : ΔG = -533.08 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 12 : ΔG = -532.94 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 13 : ΔG = -532.94 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 14 : ΔG = -532.68 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 15 : ΔG = -532.23 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 16 : ΔG = -530.61 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 17 : ΔG = -529.80 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 18 : ΔG = -526.19 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 19 : ΔG = -525.97 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 20 : ΔG = -525.41 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 21 : ΔG = -520.10 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 22 : ΔG = -515.29 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 23 : ΔG = -490.16 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 24 : ΔG = -430.91 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

Dot plot folding comparisons for aav:
Image format: PostScriptpngjpg
Compare selected foldings:     1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   17   18   19   20   21   22   23   24   All
     

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These computations were performed on ip-172-31-2-102 in 27 min. and 49.18 sec. and can be accessed at http://www.unafold.org/cgi-bin/view.cgi?26Apr21-11-59-34
The results will be erased in 6 hours..