RNA folding results on 26Apr19-23-19-03 for 98.35.154.215
Initial ΔG = -86.10
.-GGG|UG GG
U C \
G G A
\ ---^GU GG
20 30 40 50 60 70 80 90 100
G U-- ---------- .-CUAACCCUAAC A G UA C U- GCUCC G UUUU UC
CCUGGGAGGGGUGG GGCCA UUUUUUGU UG GAAGG CG GG GCCG GCUUUU CCGC CGCUG UC \
GGGCCCUCCCCGCU CCGGU AAAAAACA AC CUUCC GC UC CGGC CGAAAA GGCG GCGAC AG G
- UGC CGUCGACUGU \ ----------- - - CG - UC ----- G UUUC UC
200 190 180 170 150 140 130 120 110
CC AU
GUUC U
CGAG C
AA AU
160
Structure 2
Folding bases 1 to 208 of 26Apr19-23-19-03
Initial ΔG = -85.00
10 20 30 40 50 60 70 80 90 100
GGGUUG A| U CUG G - UG --- .-CUAACCCUAAC A G UA C U- GCUCC G UUUU UC
CGG GGG GGGC GGA GGGU GG GC CAUUUUUUGU UG GAAGG CG GG GCCG GCUUUU CCGC CGCUG UC \
GCC CUC CCCG CUU CCCG UC CG GUAAAAAACA AC CUUCC GC UC CGGC CGAAAA GGCG GCGAC AG G
GG---- -^ - --- G G GU ACU \ ----------- - - CG - UC ----- G UUUC UC
200 190 180 170 150 140 130 120 110
CC AU
GUUC U
CGAG C
AA AU
160
Structure 3
Folding bases 1 to 208 of 26Apr19-23-19-03
Initial ΔG = -84.80
10 20 30 40 50
--- UU-- - G -- G - .-AUUUUUU| A- AAC
GGG GCGGA GGGU GGC CUG--GGA GGGUGGU GGCC GUCUA CCCU U
CCC CGCUU CCCG UCG GAC CCU UCCGCCG CCGG CGGAU GGGA G
GGG UCCC G G UC \ - U \ -------^ GC AGA
200 190 180 140 70 60
80 90 100
GCCGU GCUCC G UUUU UC
GCUUUU CCGC CGCUG UC \
CGAAAA GGCG GCGAC AG G
CUC-- ----- G UUUC UC
130 120 110
150
ACC---------- AU
GUUC U
CGAG C
UGUAAAAAACAAA AU
170 160
Structure 4
Folding bases 1 to 208 of 26Apr19-23-19-03
Initial ΔG = -84.50
10 20 30 40 50
--- UUGC A GG .-UGG| G U- .-CAUUUUUU A- AAC
GGG GG G UGGGCC GAG GGUGG GGC GUCUA CCCU U
CCC CC C GCCCGG CUU CCACC CCG CGGAU GGGA G
GGG UCC- G UU \ ---^ G UU \ -------- GC AGA
200 190 150 70 60
80 90 100
----- U- GCUCC G UUUU UC
GCCG GCUUUU CCGC CGCUG UC \
CGGC CGAAAA GGCG GCGAC AG G
CCGUC UC ----- G UUUC UC
140 130 120 110
160 170
AUUCUAG AA AA
AGC ACA \
UCG UGU A
UCG---- AC AA
180
Structure 5
Folding bases 1 to 208 of 26Apr19-23-19-03
Initial ΔG = -84.10
10 20 30 40 50
--- UU-- - G G GG .-CCAUUUU| G UAACC
GGG GCGGA GGGU GGC--CUGGGA G UGGUGG UU UC \
CCC CGCUU CCCG UCG GAUCUU C GCCACC AA AG C
GGG UCCC G G \ A UU \ -------^ G UCAAU
200 190 160 150 60
70 80 90 100
G- UA C U- GCUCC G UUUU UC
GGCG GG GCCG GCUUUU CCGC CGCUG UC \
CCGC UC CGGC CGAAAA GGCG GCGAC AG G
UU CG - UC ----- G UUUC UC
140 130 120 110
170
A AA AA
GC ACA \
CG UGU A
U AC AA
180
Structure 6
Folding bases 1 to 208 of 26Apr19-23-19-03
Initial ΔG = -82.90
.-GGG UG GG
U C \
G G A
\ --- GU GG
20 30 40 50 60 70 80
G U-- .-UUUUUUGUCUAACCCUAACU GUA - U--- U
CCUGGGAGGGGUGG GGCCA GAGAAGGGC GGCGC CG GC U
GGGCCCUCCCCGCU CCGGU CUCUUUUUG UCGCG GC CG U
- UGC \ -------------------- --- C CCCU U
200 190 100 90
110 120
---| .-UUUCA G AA
GCUGAC GCGGGC GA A
CGACUG CGUCCG CU G
CGU^ \ ----- G CC
180 140 130
150
CGCCUUCCACC AU
GUUC U
CGAG C
UAAAAAACAAA AU
170 160
Structure 7
Folding bases 1 to 208 of 26Apr19-23-19-03
Initial ΔG = -81.80
10 20 30 40 50
--- UU-- - G -- G - .-AUUUUUU A- AAC
GGG GCGGA GGGU GGC CUG--GGA GGGUGGU GGCC GUCUA CCCU U
CCC CGCUU CCCG UCG GAC CCU UCCGCCG CCGG CGGAU GGGA G
GGG UCCC G G UC \ - U \ ------- GC AGA
200 190 180 140 70 60
80
.-GCC UUUUG
GUGC \
CGCG C
\ --- CCCCU
90
100 110
---| G UU AC
GCU UUU CUCGCUG \
CGA AAG GGGCGAC U
CUC^ A GC UU
130 120
150
ACC---------- AU
GUUC U
CGAG C
UGUAAAAAACAAA AU
170 160
mfold version 3.6M. Zuker, Rensselaer Polytechnic Institute