Thermodynamics of Folding

Structure 1
26Apr19-23-19-03
ΔG = -86.10

Structural elementδGInformation
External loop -0.50 4 ss bases & 2 closing helices.
Stack -3.30External closing pair is C 18-G 208
Stack -2.10External closing pair is C 19-G 207
Stack -1.40External closing pair is U 20-G 206
Stack -3.30External closing pair is G 21-C 205
Stack -3.30External closing pair is G 22-C 204
Stack -2.40External closing pair is G 23-C 203
Stack -2.10External closing pair is A 24-U 202
Stack -3.30External closing pair is G 25-C 201
Stack -3.30External closing pair is G 26-C 200
Stack -3.30External closing pair is G 27-C 199
Stack -2.50External closing pair is G 28-C 198
Stack -1.40External closing pair is U 29-G 197
Stack -1.50External closing pair is G 30-C 196
Helix -33.20 14 base pairs.
Interior loop 3.40External closing pair is G 31-U 195
Stack -3.30External closing pair is G 33-C 191
Stack -3.40External closing pair is G 34-C 190
Stack -3.30External closing pair is C 35-G 189
Stack -2.10External closing pair is C 36-G 188
Helix -12.10 5 base pairs.
Bulge loop 5.90External closing pair is A 37-U 187
Stack -0.90External closing pair is U 38-A 176
Stack -0.90External closing pair is U 39-A 175
Stack -0.90External closing pair is U 40-A 174
Stack -0.90External closing pair is U 41-A 173
Stack -0.90External closing pair is U 42-A 172
Stack -2.10External closing pair is U 43-A 171
Stack -2.20External closing pair is G 44-C 170
Helix -8.80 8 base pairs.
Multi-loop 2.60External closing pair is U 45-A 169
15 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 153-C 166
Stack -0.60External closing pair is U 154-G 165
Stack -2.40External closing pair is U 155-A 164
Helix -5.50 4 base pairs.
Hairpin loop 3.90Closing pair is C 156-G 163
Stack -2.10External closing pair is U 57-A 150
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 58-C 149
Stack -2.40External closing pair is G 60-C 148
Stack -0.90External closing pair is A 61-U 147
Stack -2.10External closing pair is A 62-U 146
Stack -3.30External closing pair is G 63-C 145
Helix -8.70 5 base pairs.
Bulge loop 0.40External closing pair is G 64-C 144
Stack -2.40External closing pair is C 66-G 143
Helix -2.40 2 base pairs.
Interior loop 0.90External closing pair is G 67-C 142
Stack -2.10External closing pair is G 70-U 139
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 71-C 138
Stack -3.40External closing pair is G 73-C 137
Stack -3.30External closing pair is C 74-G 136
Stack -2.40External closing pair is C 75-G 135
Helix -9.10 4 base pairs.
Interior loop 1.20External closing pair is G 76-C 134
Stack -3.40External closing pair is G 78-C 131
Stack -2.10External closing pair is C 79-G 130
Stack -0.90External closing pair is U 80-A 129
Stack -0.90External closing pair is U 81-A 128
Stack -0.90External closing pair is U 82-A 127
Helix -8.20 6 base pairs.
Bulge loop 4.50External closing pair is U 83-A 126
Stack -3.30External closing pair is C 89-G 125
Stack -2.40External closing pair is C 90-G 124
Stack -3.40External closing pair is G 91-C 123
Helix -9.10 4 base pairs.
Interior loop -1.70External closing pair is C 92-G 122
Stack -2.40External closing pair is C 94-G 120
Stack -3.40External closing pair is G 95-C 119
Stack -2.10External closing pair is C 96-G 118
Stack -2.10External closing pair is U 97-A 117
Helix -10.00 5 base pairs.
Interior loop 2.30External closing pair is G 98-C 116
Stack -2.40External closing pair is U 103-A 111
Helix -2.40 2 base pairs.
Hairpin loop 3.60Closing pair is C 104-G 110
Interior loop -3.90External closing pair is U 4-G 16
Hairpin loop 4.00Closing pair is C 7-G 13