Thermodynamics of Folding

Structure 3
26Apr19-23-19-03
ΔG = -84.80

Structural elementδGInformation
External loop -1.70 3 ss bases & 1 closing helices.
Stack -3.30External closing pair is G 1-C 205
Stack -3.30External closing pair is G 2-C 204
Helix -6.60 3 base pairs.
Interior loop 2.30External closing pair is G 3-C 203
Stack -3.40External closing pair is G 6-C 198
Stack -2.40External closing pair is C 7-G 197
Stack -1.50External closing pair is G 8-C 196
Stack -1.30External closing pair is G 9-U 195
Helix -8.60 5 base pairs.
Bulge loop 1.70External closing pair is A 10-U 194
Stack -3.30External closing pair is G 11-C 192
Stack -3.30External closing pair is G 12-C 191
Stack -2.50External closing pair is G 13-C 190
Helix -9.10 4 base pairs.
Interior loop -0.40External closing pair is U 14-G 189
Stack -2.10External closing pair is G 16-U 187
Stack -3.40External closing pair is G 17-C 186
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 18-G 185
Stack -2.10External closing pair is C 19-G 182
Stack -2.10External closing pair is U 20-A 181
Helix -4.20 3 base pairs.
Multi-loop 0.80External closing pair is G 21-C 180
16 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 153-C 166
Stack -0.60External closing pair is U 154-G 165
Stack -2.40External closing pair is U 155-A 164
Helix -5.50 4 base pairs.
Hairpin loop 3.90Closing pair is C 156-G 163
Stack -3.30External closing pair is G 22-C 149
Stack -2.40External closing pair is G 23-C 148
Helix -5.70 3 base pairs.
Bulge loop 3.20External closing pair is A 24-U 147
Stack -2.10External closing pair is G 26-U 146
Stack -3.30External closing pair is G 27-C 145
Stack -2.50External closing pair is G 28-C 144
Stack -1.40External closing pair is U 29-G 143
Stack -3.30External closing pair is G 30-C 142
Stack -2.50External closing pair is G 31-C 141
Helix -15.10 7 base pairs.
Bulge loop 2.40External closing pair is U 32-G 140
Stack -3.30External closing pair is G 33-C 138
Stack -3.40External closing pair is G 34-C 137
Stack -3.30External closing pair is C 35-G 136
Helix -10.00 4 base pairs.
Multi-loop 0.10External closing pair is C 36-G 135
15 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 78-C 131
Stack -2.10External closing pair is C 79-G 130
Stack -0.90External closing pair is U 80-A 129
Stack -0.90External closing pair is U 81-A 128
Stack -0.90External closing pair is U 82-A 127
Helix -8.20 6 base pairs.
Bulge loop 4.50External closing pair is U 83-A 126
Stack -3.30External closing pair is C 89-G 125
Stack -2.40External closing pair is C 90-G 124
Stack -3.40External closing pair is G 91-C 123
Helix -9.10 4 base pairs.
Interior loop -1.70External closing pair is C 92-G 122
Stack -2.40External closing pair is C 94-G 120
Stack -3.40External closing pair is G 95-C 119
Stack -2.10External closing pair is C 96-G 118
Stack -2.10External closing pair is U 97-A 117
Helix -10.00 5 base pairs.
Interior loop 2.30External closing pair is G 98-C 116
Stack -2.40External closing pair is U 103-A 111
Helix -2.40 2 base pairs.
Hairpin loop 3.60Closing pair is C 104-G 110
Stack -2.50External closing pair is G 44-C 72
Stack -1.50External closing pair is U 45-G 71
Stack -2.10External closing pair is C 46-G 70
Stack -1.30External closing pair is U 47-A 69
Helix -7.40 5 base pairs.
Interior loop 2.40External closing pair is A 48-U 68
Stack -3.30External closing pair is C 50-G 65
Stack -3.30External closing pair is C 51-G 64
Stack -2.10External closing pair is C 52-G 63
Helix -8.70 4 base pairs.
Hairpin loop 5.10Closing pair is U 53-A 62