DNA folding results on aptamer_TPO1 for 104.64.221.41

 
- RNA duplex -
aptamer_TPO1 is the 491625th nucleic acid sequence folded on the Amazon hosted mfold server.
- Monday, April 20 05:38:13 UTC 2026 -

Folding aptamer_TPO1 at 37° C. (3.6)
[Na+] = 200 mM,     [Mg++] = 10 mM, oligo correction
- Computed for 104.64.221.41 Flag -



Output

The energy dot plot for aptamer_TPO1. (Definition)
File formats: Text, PostScript, pdf, png, jpg

Computed Structures:   (File Formats)
The computed foldings contain 11 base pairs out of 11 (100.0%) in the energy dot plot.

Extra files:   sorted ct file;   h-num values;   p-num values;   log file for main computations.

Download all foldings

Choose zipped file: or gzipped tar file:    

View ss-count information

(Definition)   (ss-count file)  ss value = 3.00 ± 1.02

Averaging window     Magnification   Base to magnify about   Plot format    

View Individual Structures:


Circular structure Plots

◈ Structure 1 : ΔG = -0.05 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 2 : ΔG = 0.24 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 3 : ΔG = 0.34 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 4 : ΔG = 0.95 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

Dot plot folding comparisons for aptamer_TPO1:
Image format:
Compare selected foldings:     1   2   3   4
     


These computations were performed on ip-172-31-2-102 in 0 min. and 6.25 sec. and can be accessed at http://www.unafold.org/cgi-bin/view.cgi?26Apr20-05-38-11
The results will be erased in 6 hours..