EMCV-IRES is the 493612th nucleic acid sequence folded on the Amazon hosted mfold server. - Tuesday, April 21 05:52:08 UTC 2026 -

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Folding EMCV-IRES at 37° C. (3.6)
- Computed for 122.70.140.58 -

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Linear RNA folding at 10%, window = 10, max folds = 50 134 A's, 157 C's, 150 G's, 139 U/T's and 0 N's. 10 20 30 40 50 ccccucuccc uccccccccc cuaacguuac uggccgaagc cgcuuggaau 60 70 80 90 100 aaggccggug ugcguuuguc uauauguuau uuuccaccau auugccgucu 110 120 130 140 150 uuuggcaaug ugagggcccg gaaaccuggc ccugucuucu ugacgagcau 160 170 180 190 200 uccuaggggu cuuuccccuc ucgccaaagg aaugcaaggu cuguugaaug 210 220 230 240 250 ucgugaagga agcaguuccu cuggaagcuu cuugaagaca aacaacgucu 260 270 280 290 300 guagcgaccc uuugcaggca gcggaacccc ccaccuggcg acaggugccu 310 320 330 340 350 cugcggccaa aagccacgug uauaagauac accugcaaag gcggcacaac 360 370 380 390 400 cccagugcca cguugugagu uggauaguug uggaaagagu caaauggcuc 410 420 430 440 450 uccucaagcg uauucaacaa ggggcugaag gaugcccaga agguacccca 460 470 480 490 500 uuguauggga ucugaucugg ggccucggug cacaugcuuu acauguguuu 510 520 530 540 550 agucgagguu aaaaaaacgu cuaggccccc cgaaccacgg ggacgugguu 560 570 580 uuccuuugaa aaacacgaug auaauauggc

Output

The energy dot plot for EMCV-IRES. (Definition)
File formats: Text, PostScript, pdf, png, jpg

Computed Structures:   (File Formats)
The computed foldings contain 705 base pairs out of 11731 (6.0%) in the energy dot plot.

Extra files:   sorted ct file;   h-num values;   p-num values;   log file for main computations.

Download all foldings

Choose zipped file: or gzipped tar file:   PostScriptPDFpngjpgctViennaRNAMLRnaViz ctMac ct RNAdrawXRNA ss  

View ss-count information

(Definition)   (ss-count file)  ss value = 6.29 ± 6.61

Averaging window   13579 1113151719 25517599   Magnification   Base to magnify about   Plot format   PostScriptPDFpngjpg  

View Individual Structures:

Circular structure Plots

◈ Structure 1 : Initial ΔG = -223.80 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 2 : Initial ΔG = -221.90 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 3 : Initial ΔG = -221.10 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 4 : Initial ΔG = -219.70 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 5 : Initial ΔG = -219.10 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 6 : Initial ΔG = -219.00 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 7 : Initial ΔG = -218.10 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 8 : Initial ΔG = -217.20 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 9 : Initial ΔG = -216.70 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 10 : Initial ΔG = -215.30 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 11 : Initial ΔG = -213.40 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 12 : Initial ΔG = -213.40 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 13 : Initial ΔG = -212.60 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 14 : Initial ΔG = -212.10 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 15 : Initial ΔG = -210.40 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 16 : Initial ΔG = -209.80 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 17 : Initial ΔG = -207.80 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

Dot plot folding comparisons for EMCV-IRES:
Image format: PostScriptpngjpg
Compare selected foldings:     1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   17   All
     

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These computations were performed on ip-172-31-2-102 in 0 min. and 43.60 sec. and can be accessed at http://www.unafold.org/cgi-bin/view.cgi?26Apr21-05-52-06
The results will be erased in 6 hours..