J2 is the 493618th nucleic acid sequence folded on the Amazon hosted mfold server. - Tuesday, April 21 05:57:21 UTC 2026 -

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Folding J2 at 37° C. (3.6)
[Na⁺] = 1.0 M,     [Mg⁺⁺] = 0.0 M, oligo correction
- Computed for 220.168.84.220 -

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Linear DNA folding at 5%, window = 2, max folds = 50 8 A's, 13 C's, 19 G's, 12 U/T's and 0 N's. 10 20 30 40 50 TTTTTAAGCC CACGCCACTG TGGGGGACGA GCGACGTTGG GGTCGTGCCA 60 TG

Output

The energy dot plot for J2. (Definition)
File formats: Text, PostScript, pdf, png, jpg

Computed Structures:   (File Formats)
The computed foldings contain 15 base pairs out of 25 (60.0%) in the energy dot plot.

Extra files:   sorted ct file;   h-num values;   p-num values;   log file for main computations.

Download all foldings

Choose zipped file: or gzipped tar file:   PostScriptPDFpngjpgctViennaRNAMLRnaViz ctMac ct RNAdrawXRNA ss  

View ss-count information

(Definition)   (ss-count file)  ss value = 1.19 ± 0.84

Averaging window   13579 1113151719 25517599   Magnification   Base to magnify about   Plot format   PostScriptPDFpngjpg  

View Individual Structures:

Circular structure Plots

◈ Structure 1 : ΔG = -7.89 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 2 : ΔG = -7.78 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

Dot plot folding comparison for J2:
Image format: PostScriptpngjpg
Compare selected foldings:     1   2
     

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These computations were performed on ip-172-31-2-102 in 0 min. and 6.23 sec. and can be accessed at http://www.unafold.org/cgi-bin/view.cgi?26Apr21-05-57-18
The results will be erased in 6 hours..