Seq2 is the 493794th nucleic acid sequence folded on the Amazon hosted mfold server. - Tuesday, April 21 06:57:24 UTC 2026 -

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Folding Seq2 at 25° C. (3.6)
[Na⁺] = 137 mM,     [Mg⁺⁺] = 1.5 mM, oligo correction
- Computed for 202.170.48.3 -

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Linear DNA folding at 5%, window = 2, max folds = 50 21 A's, 16 C's, 23 G's, 20 U/T's and 0 N's. 10 20 30 40 50 TGGTCCAATT CACAGGCTCA GATCATCTTT TGGTTAGAGA TCCTAGTACG 60 70 80 GGGAGTAACA GGCGAACATG TGACCGGGTA

Output

The energy dot plot for Seq2. (Definition)
File formats: Text, PostScript, pdf, png, jpg

Computed Structures:   (File Formats)
The computed foldings contain 41 base pairs out of 68 (60.3%) in the energy dot plot.

Extra files:   sorted ct file;   h-num values;   p-num values;   log file for main computations.

Download all foldings

Choose zipped file: or gzipped tar file:   PostScriptPDFpngjpgctViennaRNAMLRnaViz ctMac ct RNAdrawXRNA ss  

View ss-count information

(Definition)   (ss-count file)  ss value = 3.90 ± 1.81

Averaging window   13579 1113151719 25517599   Magnification   Base to magnify about   Plot format   PostScriptPDFpngjpg  

View Individual Structures:

Circular structure Plots

◈ Structure 1 : ΔG = -3.43 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 2 : ΔG = -3.34 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 3 : ΔG = -3.34 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 4 : ΔG = -3.33 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 5 : ΔG = -2.98 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

◈ Structure 6 : ΔG = -2.59 kcal/mol, (Thermodynamic Details).
Different file formats: PostScript, pdf, png, jpg, .ct file, Vienna, RNAML, RnaViz ct, Mac ct, RNAdraw, XRNA ss.

Dot plot folding comparisons for Seq2:
Image format: PostScriptpngjpg
Compare selected foldings:     1   2   3   4   5   6   All
     

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These computations were performed on ip-172-31-2-102 in 0 min. and 26.24 sec. and can be accessed at http://www.unafold.org/cgi-bin/view.cgi?26Apr21-06-57-19
The results will be erased in 6 hours..