The DINAMelt Server - free energy decomposition results for unnamed job 260420_031844

Loop Free-Energy Decomposition

Dimer 1

ΔG = -3.3 kcal/mol ΔH = -25.6 kcal/mol ΔS = -74.8 e.u. Tm = -39.6°C

Structural elementδδGInformation
External loop-0.7542 ss bases & 1 closing helices
Stack-0.99External closing pair is A25-T17
Stack-1.44External closing pair is T26-A16
Stack-1.40External closing pair is C27-G15
Helix-3.834 base pairs
External loop+1.29Closing pair is T28-A14

Dimer 2

ΔG = -3.6 kcal/mol ΔH = -22.0 kcal/mol ΔS = -61.8 e.u. Tm = -45.3°C

Structural elementδδGInformation
External loop-0.7133 ss bases & 1 closing helices
Stack-1.40External closing pair is A15-T16
Stack-2.40External closing pair is G16-C15
Helix-3.803 base pairs
External loop+0.92Closing pair is C17-G14

Dimer 3

ΔG = -3.2 kcal/mol ΔH = -22.5 kcal/mol ΔS = -64.6 e.u. Tm = -46.8°C

Structural elementδδGInformation
External loop-0.2814 ss bases & 1 closing helices
Stack-1.40External closing pair is A15-T35
Stack-2.40External closing pair is G16-C34
Helix-3.803 base pairs
External loop+0.85Closing pair is C17-G33

Dimer 4

ΔG = -2.7 kcal/mol ΔH = -27.1 kcal/mol ΔS = -81.7 e.u. Tm = -40.6°C

Structural elementδδGInformation
External loop-0.8533 ss bases & 1 closing helices
Stack-0.99External closing pair is A25-T26
Stack-1.44External closing pair is T26-A25
Helix-2.433 base pairs
External loop+0.55Closing pair is C27-G24

Dimer 5

ΔG = -2.0 kcal/mol ΔH = -22.2 kcal/mol ΔS = -67.6 e.u. Tm = -50.4°C

Structural elementδδGInformation
External loop-0.9733 ss bases & 1 closing helices
Stack-2.40External closing pair is G16-C17
Helix-2.402 base pairs
External loop+1.34Closing pair is C17-G16

Dimer 6

ΔG = -2.8 kcal/mol ΔH = -23.8 kcal/mol ΔS = -70.6 e.u. Tm = -47.3°C

Structural elementδδGInformation
External loop-0.8518 ss bases & 1 closing helices
Stack-1.14External closing pair is A14-T30
Stack-1.40External closing pair is A15-T29
Helix-2.543 base pairs
External loop+0.63Closing pair is G16-C28

Dimer 7

ΔG = -3.2 kcal/mol ΔH = -29.8 kcal/mol ΔS = -89.0 e.u. Tm = -32.5°C

Structural elementδδGInformation
External loop-1.2635 ss bases & 1 closing helices
Stack-1.40External closing pair is C30-G29
Stack-1.44External closing pair is T31-A28
Helix-2.843 base pairs
External loop+0.85Closing pair is C32-G27

Dimer 8

ΔG = -4.9 kcal/mol ΔH = -62.7 kcal/mol ΔS = -193.9 e.u. Tm = 1.0°C

Structural elementδδGInformation
External loop-0.8526 ss bases & 1 closing helices
Stack-0.99External closing pair is A25-T33
Stack-1.44External closing pair is T26-A32
Helix-2.433 base pairs
Bulge loop+2.58External closing pair is C27-G31
Stack-0.70External closing pair is T28-A29
Stack-1.58External closing pair is A29-T28
Stack-1.40External closing pair is C30-G27
Stack-1.44External closing pair is T31-A26
Helix-5.125 base pairs
External loop+0.92Closing pair is C32-G25

Dimer 9

ΔG = -7.5 kcal/mol ΔH = -77.6 kcal/mol ΔS = -235.2 e.u. Tm = 14.3°C

Structural elementδδGInformation
External loop-0.7711 ss bases & 1 closing helices
Stack-1.95External closing pair is C10-G33
Stack-1.59External closing pair is C11-G32
Stack-0.99External closing pair is A12-T31
Helix-4.534 base pairs
Interior loop+2.18External closing pair is T13-A30
Stack-0.61External closing pair is G16-T28
Helix-0.612 base pairs
Interior loop+1.59External closing pair is C17-G27
Stack-1.58External closing pair is A19-T25
Stack-1.59External closing pair is C20-G24
Stack-1.14External closing pair is A21-T23
Stack-1.58External closing pair is A22-T22
Helix-5.885 base pairs
External loop+0.55Closing pair is C23-G21

Dimer 10

ΔG = -4.1 kcal/mol ΔH = -33.1 kcal/mol ΔS = -97.1 e.u. Tm = -22.2°C

Structural elementδδGInformation
External loop-1.5038 ss bases & 1 closing helices
Stack-1.59External closing pair is C18-G14
Stack-1.58External closing pair is A19-T13
Helix-3.173 base pairs
External loop+0.53Closing pair is C20-G12

Dimer 11

ΔG = -3.2 kcal/mol ΔH = -30.9 kcal/mol ΔS = -93.0 e.u. Tm = -31.4°C

Structural elementδδGInformation
External loop-0.2818 ss bases & 1 closing helices
Stack-1.40External closing pair is A15-T31
Stack-2.40External closing pair is G16-C30
Helix-3.803 base pairs
Interior loop+2.12External closing pair is C17-G29
Stack-1.58External closing pair is A19-T27
Helix-1.582 base pairs
Interior loop+2.63External closing pair is C20-G26
Stack-1.58External closing pair is A22-T24
Stack-1.40External closing pair is C23-G23
Helix-2.983 base pairs
External loop+0.72Closing pair is T24-A22

Dimer 12

ΔG = -3.1 kcal/mol ΔH = -25.5 kcal/mol ΔS = -75.3 e.u. Tm = -41.4°C

Structural elementδδGInformation
External loop-1.5937 ss bases & 1 closing helices
Stack-2.40External closing pair is G16-C13
Helix-2.402 base pairs
External loop+0.92Closing pair is C17-G12

Dimer 13

ΔG = -3.4 kcal/mol ΔH = -27.4 kcal/mol ΔS = -80.6 e.u. Tm = -35.7°C

Structural elementδδGInformation
External loop-1.5017 ss bases & 1 closing helices
Stack-1.59External closing pair is C11-G28
Stack-0.99External closing pair is A12-T27
Helix-2.583 base pairs
External loop+0.72Closing pair is T13-A26

Dimer 14

ΔG = -3.5 kcal/mol ΔH = -53.4 kcal/mol ΔS = -167.5 e.u. Tm = -9.1°C

Structural elementδδGInformation
External loop-1.5028 ss bases & 1 closing helices
Stack-1.59External closing pair is C11-G17
Stack-0.99External closing pair is A12-T16
Helix-2.583 base pairs
Bulge loop+3.27External closing pair is T13-A15
Stack-1.40External closing pair is A15-T14
Stack-2.40External closing pair is G16-C13
Helix-3.803 base pairs
External loop+1.14Closing pair is C17-G12

Dimer 15

ΔG = -4.3 kcal/mol ΔH = -33.8 kcal/mol ΔS = -99.0 e.u. Tm = -20.5°C

Structural elementδδGInformation
External loop-1.1735 ss bases & 1 closing helices
Stack-0.99External closing pair is A25-T24
Stack-1.44External closing pair is T26-A23
Stack-1.40External closing pair is C27-G22
Helix-3.834 base pairs
External loop+0.72Closing pair is T28-A21

Dimer 16

ΔG = -4.0 kcal/mol ΔH = -36.3 kcal/mol ΔS = -108.4 e.u. Tm = -19.6°C

Structural elementδδGInformation
External loop-1.0429 ss bases & 1 closing helices
Stack-1.59External closing pair is C18-G23
Stack-1.58External closing pair is A19-T22
Helix-3.173 base pairs
External loop+0.23Closing pair is C20-G21

Dimer 17

ΔG = -2.8 kcal/mol ΔH = -24.1 kcal/mol ΔS = -71.5 e.u. Tm = -46.5°C

Structural elementδδGInformation
External loop-0.6038 ss bases & 1 closing helices
Stack-1.14External closing pair is A21-T17
Stack-1.58External closing pair is A22-T16
Helix-2.713 base pairs
External loop+0.55Closing pair is C23-G15

Dimer 18

ΔG = -3.1 kcal/mol ΔH = -25.5 kcal/mol ΔS = -75.3 e.u. Tm = -41.4°C

Structural elementδδGInformation
External loop-1.5933 ss bases & 1 closing helices
Stack-2.40External closing pair is G16-C17
Helix-2.402 base pairs
External loop+0.92Closing pair is C17-G16

Dimer 19

ΔG = -4.0 kcal/mol ΔH = -40.3 kcal/mol ΔS = -121.8 e.u. Tm = -15.7°C

Structural elementδδGInformation
External loop-1.1543 ss bases & 1 closing helices
Stack-1.40External closing pair is C27-G18
Stack-0.70External closing pair is T28-A17
Stack-1.58External closing pair is A29-T16
Helix-3.684 base pairs
External loop+0.84Closing pair is C30-G15

Dimer 20

ΔG = -6.5 kcal/mol ΔH = -83.8 kcal/mol ΔS = -259.3 e.u. Tm = 11.8°C

Structural elementδδGInformation
External loop-1.1712 ss bases & 1 closing helices
Stack-0.99External closing pair is A3-T25
Stack-1.14External closing pair is T4-A24
Stack-1.44External closing pair is T5-A23
Stack-1.95External closing pair is C6-G22
Helix-5.515 base pairs
Interior loop+4.67External closing pair is C7-G21
Stack-1.95External closing pair is C10-G14
Stack-1.59External closing pair is C11-G13
Stack-0.99External closing pair is A12-T12
Stack-0.70External closing pair is T13-A11
Stack-1.14External closing pair is A14-T10
Helix-6.376 base pairs
External loop+1.88Closing pair is A15-T9

Dimer 21

ΔG = -2.8 kcal/mol ΔH = -26.5 kcal/mol ΔS = -79.4 e.u. Tm = -41.2°C

Structural elementδδGInformation
External loop-2.0037 ss bases & 1 closing helices
Stack-1.59External closing pair is C20-G17
Stack-1.14External closing pair is A21-T16
Helix-2.733 base pairs
External loop+1.91Closing pair is A22-T15