The DINAMelt Server - free energy decomposition results for unnamed job 260420_033742

Loop Free-Energy Decomposition

Dimer 1

ΔG = -3.7 kcal/mol ΔH = -31.0 kcal/mol ΔS = -91.6 e.u. Tm = -27.9°C

Structural elementδδGInformation
External loop-1.5036 ss bases & 1 closing helices
Stack-1.40External closing pair is C17-G15
Stack-1.59External closing pair is T18-A14
Helix-2.993 base pairs
External loop+0.80Closing pair is G19-C13

Dimer 2

ΔG = -3.7 kcal/mol ΔH = -23.3 kcal/mol ΔS = -65.6 e.u. Tm = -41.1°C

Structural elementδδGInformation
External loop-0.8646 ss bases & 1 closing helices
Stack-1.40External closing pair is A28-T16
Stack-2.40External closing pair is G29-C15
Helix-3.803 base pairs
External loop+0.92Closing pair is C30-G14

Dimer 3

ΔG = -4.3 kcal/mol ΔH = -47.2 kcal/mol ΔS = -143.9 e.u. Tm = -8.9°C

Structural elementδδGInformation
External loop-0.0518 ss bases & 1 closing helices
Stack-1.14External closing pair is T11-A27
Stack-1.14External closing pair is T12-A26
Stack-0.70External closing pair is T13-A25
Stack-0.99External closing pair is A14-T24
Stack-1.44External closing pair is T15-A23
Helix-5.406 base pairs
External loop+1.14Closing pair is C16-G22

Dimer 4

ΔG = -4.3 kcal/mol ΔH = -31.1 kcal/mol ΔS = -89.9 e.u. Tm = -23.7°C

Structural elementδδGInformation
External loop-1.1724 ss bases & 1 closing helices
Stack-0.99External closing pair is A21-T31
Stack-1.59External closing pair is T22-A30
Stack-1.58External closing pair is G23-C29
Helix-4.164 base pairs
External loop+1.04Closing pair is T24-A28

Dimer 5

ΔG = -3.2 kcal/mol ΔH = -29.8 kcal/mol ΔS = -89.0 e.u. Tm = -32.5°C

Structural elementδδGInformation
External loop-1.0429 ss bases & 1 closing helices
Stack-1.44External closing pair is G27-C32
Stack-1.40External closing pair is A28-T31
Helix-2.843 base pairs
External loop+0.63Closing pair is G29-C30

Dimer 6

ΔG = -4.6 kcal/mol ΔH = -35.1 kcal/mol ΔS = -102.5 e.u. Tm = -17.4°C

Structural elementδδGInformation
External loop-1.5039 ss bases & 1 closing helices
Stack-2.36External closing pair is C31-G26
Stack-1.44External closing pair is G32-C25
Stack-1.14External closing pair is A33-T24
Helix-4.934 base pairs
External loop+1.88Closing pair is A34-T23

Dimer 7

ΔG = -3.1 kcal/mol ΔH = -23.4 kcal/mol ΔS = -68.2 e.u. Tm = -39.7°C

Structural elementδδGInformation
External loop-1.5033 ss bases & 1 closing helices
Stack-2.36External closing pair is C31-G32
Helix-2.362 base pairs
External loop+0.80Closing pair is G32-C31

Dimer 8

ΔG = -3.5 kcal/mol ΔH = -27.6 kcal/mol ΔS = -80.8 e.u. Tm = -34.3°C

Structural elementδδGInformation
External loop-1.0444 ss bases & 1 closing helices
Stack-2.36External closing pair is C31-G21
Helix-2.362 base pairs
External loop-0.11Closing pair is G32-C20

Dimer 9

ΔG = -4.2 kcal/mol ΔH = -32.0 kcal/mol ΔS = -93.2 e.u. Tm = -23.2°C

Structural elementδδGInformation
External loop-0.9729 ss bases & 1 closing helices
Stack-2.40External closing pair is G29-C34
Stack-1.95External closing pair is C30-G33
Helix-4.353 base pairs
External loop+1.11Closing pair is C31-G32

Dimer 10

ΔG = -3.6 kcal/mol ΔH = -24.5 kcal/mol ΔS = -70.2 e.u. Tm = -39.8°C

Structural elementδδGInformation
External loop-0.9232 ss bases & 1 closing helices
Stack-1.40External closing pair is A28-T30
Stack-2.40External closing pair is G29-C29
Helix-3.803 base pairs
External loop+1.14Closing pair is C30-G28

Dimer 11

ΔG = -5.6 kcal/mol ΔH = -52.4 kcal/mol ΔS = -156.9 e.u. Tm = 0.2°C

Structural elementδδGInformation
External loop-1.3529 ss bases & 1 closing helices
Stack-1.44External closing pair is G27-C32
Stack-1.40External closing pair is A28-T31
Stack-2.40External closing pair is G29-C30
Helix-5.244 base pairs
Bulge loop+2.99External closing pair is C30-G29
Stack-2.36External closing pair is C31-G26
Helix-2.362 base pairs
External loop+0.35Closing pair is G32-C25

Dimer 12

ΔG = -3.9 kcal/mol ΔH = -33.1 kcal/mol ΔS = -98.0 e.u. Tm = -24.0°C

Structural elementδδGInformation
External loop-1.6644 ss bases & 1 closing helices
Stack-1.44External closing pair is G27-C17
Stack-1.40External closing pair is A28-T16
Helix-2.843 base pairs
External loop+0.63Closing pair is G29-C15

Dimer 13

ΔG = -3.5 kcal/mol ΔH = -34.3 kcal/mol ΔS = -103.4 e.u. Tm = -24.9°C

Structural elementδδGInformation
External loop-0.7532 ss bases & 1 closing helices
Stack-1.44External closing pair is G32-C34
Stack-1.14External closing pair is A33-T33
Stack-1.40External closing pair is A34-T32
Helix-3.974 base pairs
External loop+1.25Closing pair is G35-C31

Dimer 14

ΔG = -3.5 kcal/mol ΔH = -23.6 kcal/mol ΔS = -67.4 e.u. Tm = -42.1°C

Structural elementδδGInformation
External loop-0.8648 ss bases & 1 closing helices
Stack-1.40External closing pair is A28-T14
Stack-2.40External closing pair is G29-C13
Helix-3.803 base pairs
External loop+1.14Closing pair is C30-G12

Dimer 15

ΔG = -3.7 kcal/mol ΔH = -31.0 kcal/mol ΔS = -91.6 e.u. Tm = -27.9°C

Structural elementδδGInformation
External loop-1.5022 ss bases & 1 closing helices
Stack-1.40External closing pair is C17-G29
Stack-1.59External closing pair is T18-A28
Helix-2.993 base pairs
External loop+0.80Closing pair is G19-C27

Dimer 16

ΔG = -6.9 kcal/mol ΔH = -46.3 kcal/mol ΔS = -132.0 e.u. Tm = 4.4°C

Structural elementδδGInformation
External loop+0.1024 ss bases & 1 closing helices
Stack-1.14External closing pair is T25-A35
Stack-1.59External closing pair is T26-A34
Stack-1.44External closing pair is G27-C33
Stack-1.40External closing pair is A28-T32
Stack-2.40External closing pair is G29-C31
Helix-7.966 base pairs
External loop+0.92Closing pair is C30-G30

Dimer 17

ΔG = -4.0 kcal/mol ΔH = -39.0 kcal/mol ΔS = -117.5 e.u. Tm = -17.1°C

Structural elementδδGInformation
External loop-1.3532 ss bases & 1 closing helices
Stack-1.58External closing pair is G19-C21
Stack-0.70External closing pair is T20-A20
Stack-0.99External closing pair is A21-T19
Helix-3.274 base pairs
External loop+0.66Closing pair is T22-A18

Dimer 18

ΔG = -4.7 kcal/mol ΔH = -44.8 kcal/mol ΔS = -134.4 e.u. Tm = -8.4°C

Structural elementδδGInformation
External loop-0.7118 ss bases & 1 closing helices
Stack-1.58External closing pair is G19-C35
Stack-0.70External closing pair is T20-A34
Stack-0.99External closing pair is A21-T33
Stack-1.59External closing pair is T22-A32
Helix-4.865 base pairs
External loop+0.85Closing pair is G23-C31

Dimer 19

ΔG = -6.6 kcal/mol ΔH = -65.4 kcal/mol ΔS = -197.2 e.u. Tm = 8.8°C

Structural elementδδGInformation
External loop-1.0931 ss bases & 1 closing helices
Stack-1.95External closing pair is C16-G19
Stack-1.40External closing pair is C17-G18
Helix-3.353 base pairs
Bulge loop+3.25External closing pair is T18-A17
Stack+0.10External closing pair is A21-T16
Stack-0.48External closing pair is T22-G15
Stack-1.58External closing pair is G23-C14
Stack-1.14External closing pair is T24-A13
Stack-1.14External closing pair is T25-A12
Stack-1.59External closing pair is T26-A11
Helix-5.817 base pairs
External loop+0.39Closing pair is G27-C10

Dimer 20

ΔG = -6.0 kcal/mol ΔH = -41.9 kcal/mol ΔS = -120.3 e.u. Tm = -3.0°C

Structural elementδδGInformation
External loop-0.4626 ss bases & 1 closing helices
Stack-1.44External closing pair is T15-A23
Stack-1.95External closing pair is C16-G22
Stack-1.40External closing pair is C17-G21
Stack-1.59External closing pair is T18-A20
Helix-6.375 base pairs
External loop+0.80Closing pair is G19-C19

Dimer 21

ΔG = -4.1 kcal/mol ΔH = -33.3 kcal/mol ΔS = -98.1 e.u. Tm = -22.5°C

Structural elementδδGInformation
External loop-1.3531 ss bases & 1 closing helices
Stack-1.58External closing pair is G23-C26
Stack-1.14External closing pair is T24-A25
Stack-1.14External closing pair is T25-A24
Helix-3.854 base pairs
External loop+1.13Closing pair is T26-A23