The DINAMelt Server - free energy decomposition results for unnamed job 260420_041906

Loop Free-Energy Decomposition

Dimer 1

ΔG = -5.3 kcal/mol ΔH = -96.8 kcal/mol ΔS = -306.8 e.u. Tm = 10.3°C

Structural elementδδGInformation
External loop+0.1013 ss bases & 1 closing helices
Stack-1.14External closing pair is T14-A35
Stack-1.44External closing pair is T15-A34
Stack-2.36External closing pair is C16-G33
Helix-4.934 base pairs
Bulge loop+3.24External closing pair is G17-C32
Stack-1.58External closing pair is G21-C31
Stack-1.14External closing pair is T22-A30
Helix-2.713 base pairs
Interior loop+2.65External closing pair is T23-A29
Stack-1.14External closing pair is T25-A26
Stack-1.59External closing pair is T26-A25
Helix-2.733 base pairs
Interior loop+2.02External closing pair is G27-C24
Stack-1.14External closing pair is A29-T21
Stack-0.99External closing pair is A30-T20
Stack-1.59External closing pair is T31-A19
Helix-3.724 base pairs
External loop+0.74Closing pair is G32-C18

Dimer 2

ΔG = -4.6 kcal/mol ΔH = -82.4 kcal/mol ΔS = -260.9 e.u. Tm = 5.5°C

Structural elementδδGInformation
External loop-1.1724 ss bases & 1 closing helices
Stack-0.99External closing pair is A19-T29
Stack-1.59External closing pair is T20-A28
Helix-2.583 base pairs
Interior loop+2.27External closing pair is G21-C27
Stack-1.58External closing pair is G24-C23
Helix-1.582 base pairs
Interior loop+2.51External closing pair is T25-A22
Stack-0.70External closing pair is T28-A20
Stack-1.14External closing pair is A29-T19
Stack-0.99External closing pair is A30-T18
Stack+0.54External closing pair is T31-A17
Stack-0.28External closing pair is G32-T16
Stack-2.40External closing pair is G33-C15
Helix-4.977 base pairs
External loop+0.92Closing pair is C34-G14

Dimer 3

ΔG = -3.1 kcal/mol ΔH = -29.9 kcal/mol ΔS = -89.9 e.u. Tm = -33.4°C

Structural elementδδGInformation
External loop-1.0436 ss bases & 1 closing helices
Stack-1.58External closing pair is G21-C19
Stack-1.14External closing pair is T22-A18
Helix-2.713 base pairs
External loop+0.66Closing pair is T23-A17

Dimer 4

ΔG = -5.1 kcal/mol ΔH = -41.8 kcal/mol ΔS = -123.1 e.u. Tm = -8.4°C

Structural elementδδGInformation
External loop-1.6632 ss bases & 1 closing helices
Stack-1.58External closing pair is G27-C29
Stack-0.70External closing pair is T28-A28
Stack-1.14External closing pair is A29-T27
Stack-0.99External closing pair is A30-T26
Helix-4.415 base pairs
External loop+0.98Closing pair is T31-A25

Dimer 5

ΔG = -7.5 kcal/mol ΔH = -77.6 kcal/mol ΔS = -235.2 e.u. Tm = 14.3°C

Structural elementδδGInformation
External loop-1.3532 ss bases & 1 closing helices
Stack-1.58External closing pair is G21-C23
Stack-1.14External closing pair is T22-A22
Stack-1.59External closing pair is T23-A21
Stack-1.58External closing pair is G24-C20
Helix-5.885 base pairs
Interior loop+1.59External closing pair is T25-A19
Stack-0.61External closing pair is G27-C17
Helix-0.612 base pairs
Interior loop+2.18External closing pair is T28-G16
Stack-0.99External closing pair is A30-T13
Stack-1.59External closing pair is T31-A12
Stack-1.95External closing pair is G32-C11
Helix-4.534 base pairs
External loop+1.12Closing pair is G33-C10

Dimer 6

ΔG = -3.2 kcal/mol ΔH = -47.1 kcal/mol ΔS = -147.3 e.u. Tm = -14.5°C

Structural elementδδGInformation
External loop-1.3530 ss bases & 1 closing helices
Stack-1.58External closing pair is G24-C28
Stack+0.41External closing pair is T25-A27
Stack-0.48External closing pair is T26-G26
Helix-1.654 base pairs
Interior loop+1.27External closing pair is G27-C25
Stack-1.14External closing pair is A29-T23
Stack-0.99External closing pair is A30-T22
Helix-2.133 base pairs
External loop+0.66Closing pair is T31-A21

Dimer 7

ΔG = -4.2 kcal/mol ΔH = -32.0 kcal/mol ΔS = -93.2 e.u. Tm = -23.2°C

Structural elementδδGInformation
External loop-0.7835 ss bases & 1 closing helices
Stack-1.95External closing pair is G32-C31
Stack-2.40External closing pair is G33-C30
Helix-4.353 base pairs
External loop+0.92Closing pair is C34-G29

Dimer 8

ΔG = -3.9 kcal/mol ΔH = -37.0 kcal/mol ΔS = -111.2 e.u. Tm = -19.6°C

Structural elementδδGInformation
External loop-1.5021 ss bases & 1 closing helices
Stack-1.40External closing pair is C12-G25
Helix-1.402 base pairs
Interior loop+1.70External closing pair is T13-A24
Stack-2.36External closing pair is C16-G21
Stack-1.58External closing pair is G17-C20
Helix-3.943 base pairs
External loop+1.29Closing pair is T18-A19

Dimer 9

ΔG = -5.4 kcal/mol ΔH = -35.4 kcal/mol ΔS = -100.6 e.u. Tm = -6.2°C

Structural elementδδGInformation
External loop-0.7131 ss bases & 1 closing helices
Stack-1.95External closing pair is G32-C35
Stack-2.40External closing pair is G33-C34
Stack-1.95External closing pair is C34-G33
Helix-6.294 base pairs
External loop+1.59Closing pair is C35-G32

Dimer 10

ΔG = -3.0 kcal/mol ΔH = -49.0 kcal/mol ΔS = -154.4 e.u. Tm = -14.2°C

Structural elementδδGInformation
External loop-1.0429 ss bases & 1 closing helices
Stack-1.40External closing pair is C12-G17
Stack-1.14External closing pair is T13-A16
Helix-2.543 base pairs
Interior loop+2.14External closing pair is T14-A15
Stack-2.36External closing pair is C16-G12
Helix-2.362 base pairs
External loop+0.85Closing pair is G17-C11

Dimer 11

ΔG = -3.7 kcal/mol ΔH = -25.7 kcal/mol ΔS = -73.8 e.u. Tm = -36.5°C

Structural elementδδGInformation
External loop-0.2851 ss bases & 1 closing helices
Stack-0.99External closing pair is A30-T13
Stack-1.59External closing pair is T31-A12
Stack-1.95External closing pair is G32-C11
Helix-4.534 base pairs
External loop+1.12Closing pair is G33-C10

Dimer 12

ΔG = -3.7 kcal/mol ΔH = -25.7 kcal/mol ΔS = -73.8 e.u. Tm = -36.5°C

Structural elementδδGInformation
External loop-0.2836 ss bases & 1 closing helices
Stack-0.99External closing pair is A30-T28
Stack-1.59External closing pair is T31-A27
Stack-1.95External closing pair is G32-C26
Helix-4.534 base pairs
External loop+1.12Closing pair is G33-C25

Dimer 13

ΔG = -3.5 kcal/mol ΔH = -41.1 kcal/mol ΔS = -126.3 e.u. Tm = -17.9°C

Structural elementδδGInformation
External loop-1.2326 ss bases & 1 closing helices
Stack-0.99External closing pair is A19-T27
Stack+0.54External closing pair is T20-A26
Stack+0.10External closing pair is G21-T25
Stack-1.14External closing pair is T22-A24
Stack-1.59External closing pair is T23-A23
Helix-3.076 base pairs
External loop+0.85Closing pair is G24-C22

Dimer 14

ΔG = -6.5 kcal/mol ΔH = -48.5 kcal/mol ΔS = -140.8 e.u. Tm = 3.0°C

Structural elementδδGInformation
External loop-1.3531 ss bases & 1 closing helices
Stack-1.58External closing pair is G24-C27
Stack-1.14External closing pair is T25-A26
Stack-1.59External closing pair is T26-A25
Stack-1.58External closing pair is G27-C24
Helix-5.885 base pairs
External loop+0.72Closing pair is T28-A23

Dimer 15

ΔG = -4.2 kcal/mol ΔH = -27.3 kcal/mol ΔS = -77.6 e.u. Tm = -30.2°C

Structural elementδδGInformation
External loop-0.7650 ss bases & 1 closing helices
Stack-0.99External closing pair is A30-T14
Stack-1.59External closing pair is T31-A13
Stack-1.95External closing pair is G32-C12
Helix-4.534 base pairs
External loop+1.12Closing pair is G33-C11

Dimer 16

ΔG = -3.6 kcal/mol ΔH = -36.9 kcal/mol ΔS = -111.8 e.u. Tm = -21.4°C

Structural elementδδGInformation
External loop-1.0427 ss bases & 1 closing helices
Stack-1.40External closing pair is C12-G19
Stack-1.14External closing pair is T13-A18
Stack-1.14External closing pair is T14-A17
Helix-3.674 base pairs
External loop+1.14Closing pair is T15-A16

Dimer 17

ΔG = -3.7 kcal/mol ΔH = -38.1 kcal/mol ΔS = -115.5 e.u. Tm = -19.7°C

Structural elementδδGInformation
External loop-1.0530 ss bases & 1 closing helices
Stack-1.58External closing pair is G17-C21
Stack-0.70External closing pair is T18-A20
Stack-0.99External closing pair is A19-T19
Helix-3.274 base pairs
External loop+0.66Closing pair is T20-A18

Dimer 18

ΔG = -7.2 kcal/mol ΔH = -87.4 kcal/mol ΔS = -269.1 e.u. Tm = 14.5°C

Structural elementδδGInformation
External loop-1.5522 ss bases & 1 closing helices
Stack-2.36External closing pair is C16-G28
Helix-2.362 base pairs
Interior loop+1.61External closing pair is G17-C27
Stack+0.54External closing pair is T20-A24
Stack+0.10External closing pair is G21-T23
Stack-1.14External closing pair is T22-A22
Stack-1.59External closing pair is T23-A21
Helix-2.085 base pairs
Interior loop+1.17External closing pair is G24-C20
Stack-1.59External closing pair is T26-A18
Stack-0.61External closing pair is G27-C17
Helix-2.203 base pairs
Bulge loop+3.25External closing pair is T28-G16
Stack-1.59External closing pair is T31-A15
Stack-1.95External closing pair is G32-C14
Stack-2.40External closing pair is G33-C13
Helix-5.944 base pairs
External loop+0.92Closing pair is C34-G12

Dimer 19

ΔG = -5.7 kcal/mol ΔH = -60.9 kcal/mol ΔS = -185.1 e.u. Tm = 3.8°C

Structural elementδδGInformation
External loop-1.0426 ss bases & 1 closing helices
Stack-1.95External closing pair is C11-G19
Stack-1.40External closing pair is C12-G18
Helix-3.353 base pairs
Interior loop+1.64External closing pair is T13-A17
Stack-2.36External closing pair is C16-G15
Stack-1.58External closing pair is G17-C14
Helix-3.943 base pairs
Interior loop+1.74External closing pair is T18-A13
Stack-1.59External closing pair is T20-A11
Helix-1.592 base pairs
External loop+0.85Closing pair is G21-C10

Dimer 20

ΔG = -5.8 kcal/mol ΔH = -42.8 kcal/mol ΔS = -124.2 e.u. Tm = -4.0°C

Structural elementδδGInformation
External loop-1.1712 ss bases & 1 closing helices
Stack-0.99External closing pair is A3-T25
Stack-1.14External closing pair is T4-A24
Stack-1.44External closing pair is T5-A23
Stack-1.95External closing pair is C6-G22
Helix-5.515 base pairs
External loop+0.92Closing pair is C7-G21

Dimer 21

ΔG = -3.4 kcal/mol ΔH = -43.0 kcal/mol ΔS = -132.8 e.u. Tm = -16.6°C

Structural elementδδGInformation
External loop-1.3535 ss bases & 1 closing helices
Stack-1.58External closing pair is G27-C26
Helix-1.582 base pairs
Interior loop+1.97External closing pair is T28-A25
Stack-1.59External closing pair is T31-A22
Stack-1.95External closing pair is G32-C21
Helix-3.543 base pairs
External loop+1.08Closing pair is G33-C20