The DINAMelt Server - free energy decomposition results for unnamed job 260420_043940

Loop Free-Energy Decomposition

Dimer 1

ΔG = -3.7 kcal/mol ΔH = -67.7 kcal/mol ΔS = -214.7 e.u. Tm = 1.2°C

Structural elementδδGInformation
External loop-1.1723 ss bases & 1 closing helices
Stack-1.40External closing pair is A22-T33
Helix-1.402 base pairs
Interior loop+1.46External closing pair is G23-C32
Stack-2.36External closing pair is C25-G29
Helix-2.362 base pairs
Interior loop+0.96External closing pair is G26-C28
Stack-2.36External closing pair is C28-G26
Helix-2.362 base pairs
Interior loop+1.46External closing pair is G29-C25
Stack-1.40External closing pair is C32-G23
Helix-1.402 base pairs
External loop+1.13Closing pair is T33-A22

Dimer 2

ΔG = -3.5 kcal/mol ΔH = -24.5 kcal/mol ΔS = -70.6 e.u. Tm = -40.6°C

Structural elementδδGInformation
External loop-1.3750 ss bases & 1 closing helices
Stack-2.40External closing pair is G29-C13
Stack-1.40External closing pair is C30-G12
Helix-3.803 base pairs
External loop+1.71Closing pair is T31-A11

Dimer 3

ΔG = -2.9 kcal/mol ΔH = -26.7 kcal/mol ΔS = -79.7 e.u. Tm = -39.9°C

Structural elementδδGInformation
External loop-1.5017 ss bases & 1 closing helices
Stack-1.59External closing pair is C11-G28
Stack-0.99External closing pair is A12-T27
Helix-2.583 base pairs
External loop+1.14Closing pair is T13-A26

Dimer 4

ΔG = -3.3 kcal/mol ΔH = -39.9 kcal/mol ΔS = -122.8 e.u. Tm = -20.0°C

Structural elementδδGInformation
External loop-0.7122 ss bases & 1 closing helices
Stack-1.40External closing pair is A16-T28
Stack-1.58External closing pair is G17-C27
Stack-1.14External closing pair is T18-A26
Helix-4.114 base pairs
Interior loop+2.79External closing pair is T19-A25
Stack-0.70External closing pair is T21-A23
Stack-1.40External closing pair is A22-T22
Helix-2.103 base pairs
External loop+0.85Closing pair is G23-C21

Dimer 5

ΔG = -5.8 kcal/mol ΔH = -39.6 kcal/mol ΔS = -113.2 e.u. Tm = -5.6°C

Structural elementδδGInformation
External loop-1.5919 ss bases & 1 closing helices
Stack-1.58External closing pair is G17-C32
Stack-1.14External closing pair is T18-A31
Stack-1.44External closing pair is T19-A30
Stack-1.40External closing pair is C20-G29
Helix-5.555 base pairs
External loop+1.29Closing pair is T21-A28

Dimer 6

ΔG = -3.7 kcal/mol ΔH = -31.3 kcal/mol ΔS = -92.5 e.u. Tm = -27.3°C

Structural elementδδGInformation
External loop-1.0532 ss bases & 1 closing helices
Stack-2.40External closing pair is G29-C31
Stack-1.40External closing pair is C30-G30
Helix-3.803 base pairs
External loop+1.14Closing pair is T31-A29

Dimer 7

ΔG = -2.6 kcal/mol ΔH = -27.6 kcal/mol ΔS = -83.8 e.u. Tm = -40.5°C

Structural elementδδGInformation
External loop-1.0948 ss bases & 1 closing helices
Stack-2.36External closing pair is C25-G11
Helix-2.362 base pairs
External loop+0.85Closing pair is G26-C10

Dimer 8

ΔG = -5.5 kcal/mol ΔH = -41.7 kcal/mol ΔS = -121.3 e.u. Tm = -6.0°C

Structural elementδδGInformation
External loop-0.9727 ss bases & 1 closing helices
Stack-1.58External closing pair is G23-C30
Stack-1.44External closing pair is T24-A29
Stack-2.36External closing pair is C25-G28
Helix-5.384 base pairs
External loop+0.80Closing pair is G26-C27

Dimer 9

ΔG = -7.3 kcal/mol ΔH = -48.7 kcal/mol ΔS = -138.9 e.u. Tm = 7.2°C

Structural elementδδGInformation
External loop-1.3732 ss bases & 1 closing helices
Stack-2.40External closing pair is G29-C31
Stack-1.40External closing pair is C30-G30
Stack-1.44External closing pair is T31-A29
Stack-1.40External closing pair is C32-G28
Helix-6.645 base pairs
External loop+0.72Closing pair is T33-A27

Dimer 10

ΔG = -7.2 kcal/mol ΔH = -64.6 kcal/mol ΔS = -192.6 e.u. Tm = 10.9°C

Structural elementδδGInformation
External loop-1.5923 ss bases & 1 closing helices
Stack-1.58External closing pair is G23-C34
Stack-1.44External closing pair is T24-A33
Helix-3.013 base pairs
Interior loop+1.65External closing pair is C25-G32
Stack-2.36External closing pair is C28-G30
Stack-2.40External closing pair is G29-C29
Helix-4.763 base pairs
External loop+0.55Closing pair is C30-G28

Dimer 11

ΔG = -5.9 kcal/mol ΔH = -45.4 kcal/mol ΔS = -132.5 e.u. Tm = -1.8°C

Structural elementδδGInformation
External loop-0.1827 ss bases & 1 closing helices
Stack-0.99External closing pair is A12-T19
Stack-1.44External closing pair is T13-A18
Stack-1.59External closing pair is C14-G17
Stack-1.14External closing pair is A15-T16
Stack-1.40External closing pair is A16-T15
Helix-6.556 base pairs
External loop+0.85Closing pair is G17-C14