The DINAMelt Server - free energy decomposition results for unnamed job 260420_044541

Loop Free-Energy Decomposition

Dimer 1

ΔG = -3.6 kcal/mol ΔH = -38.4 kcal/mol ΔS = -116.6 e.u. Tm = -14.7°C

Structural elementδδGInformation
External loop-1.0431 ss bases & 1 closing helices
Stack-1.44External closing pair is G17-C20
Stack-0.99External closing pair is A18-T19
Stack-1.44External closing pair is T19-A18
Helix-3.864 base pairs
External loop+1.26Closing pair is C20-G17

Dimer 2

ΔG = -4.3 kcal/mol ΔH = -53.3 kcal/mol ΔS = -164.2 e.u. Tm = -5.3°C

Structural elementδδGInformation
External loop-2.0039 ss bases & 1 closing helices
Stack-1.40External closing pair is C27-G22
Stack-0.70External closing pair is T28-A21
Helix-2.103 base pairs
Interior loop+1.92External closing pair is A29-T20
Stack-1.44External closing pair is G31-C17
Stack-1.58External closing pair is A32-T16
Helix-3.013 base pairs
External loop+0.85Closing pair is C33-G15

Dimer 3

ΔG = -4.1 kcal/mol ΔH = -32.0 kcal/mol ΔS = -93.5 e.u. Tm = -23.6°C

Structural elementδδGInformation
External loop-1.0515 ss bases & 1 closing helices
Stack-2.40External closing pair is G12-C31
Stack-1.40External closing pair is C13-G30
Helix-3.803 base pairs
External loop+0.72Closing pair is T14-A29

Dimer 4

ΔG = -3.2 kcal/mol ΔH = -24.4 kcal/mol ΔS = -71.2 e.u. Tm = -43.0°C

Structural elementδδGInformation
External loop-0.8541 ss bases & 1 closing helices
Stack-1.58External closing pair is A23-T16
Stack-1.59External closing pair is C24-G15
Stack-1.14External closing pair is A25-T14
Helix-4.304 base pairs
External loop+1.99Closing pair is A26-T13

Dimer 5

ΔG = -3.9 kcal/mol ΔH = -25.2 kcal/mol ΔS = -71.5 e.u. Tm = -36.1°C

Structural elementδδGInformation
External loop-1.3729 ss bases & 1 closing helices
Stack-2.40External closing pair is G12-C17
Stack-1.40External closing pair is C13-G16
Helix-3.803 base pairs
External loop+1.29Closing pair is T14-A15

Dimer 6

ΔG = -8.1 kcal/mol ΔH = -96.5 kcal/mol ΔS = -296.7 e.u. Tm = 18.0°C

Structural elementδδGInformation
External loop-1.3715 ss bases & 1 closing helices
Stack-2.40External closing pair is G12-C31
Stack-1.40External closing pair is C13-G30
Helix-3.803 base pairs
Bulge loop+3.83External closing pair is T14-A29
Stack-0.99External closing pair is A15-T23
Stack-1.59External closing pair is T16-A22
Stack-1.44External closing pair is G17-C21
Helix-4.024 base pairs
Bulge loop+2.40External closing pair is A18-T20
Stack-1.95External closing pair is C20-G19
Stack-1.40External closing pair is C21-G18
Stack-0.70External closing pair is T22-A17
Stack-1.58External closing pair is A23-T16
Helix-5.635 base pairs
External loop+0.53Closing pair is C24-G15

Dimer 7

ΔG = -5.8 kcal/mol ΔH = -42.8 kcal/mol ΔS = -124.2 e.u. Tm = -4.0°C

Structural elementδδGInformation
External loop-1.1712 ss bases & 1 closing helices
Stack-0.99External closing pair is A3-T25
Stack-1.14External closing pair is T4-A24
Stack-1.44External closing pair is T5-A23
Stack-1.95External closing pair is C6-G22
Helix-5.515 base pairs
External loop+0.92Closing pair is C7-G21

Dimer 8

ΔG = -4.8 kcal/mol ΔH = -34.7 kcal/mol ΔS = -100.2 e.u. Tm = -16.1°C

Structural elementδδGInformation
External loop-0.6010 ss bases & 1 closing helices
Stack-2.36External closing pair is C11-G35
Stack-2.40External closing pair is G12-C34
Helix-4.763 base pairs
External loop+0.55Closing pair is C13-G33