The DINAMelt Server - free energy decomposition results for unnamed job 260420_045011
Loop Free-Energy Decomposition
ΔG = -4.4 kcal/mol ΔH = -34.6 kcal/mol ΔS = -101.3 e.u. Tm = -13.6°C
| Structural element | δδG | Information |
|---|---|---|
| External loop | -0.75 | 31 ss bases & 1 closing helices |
| Stack | -1.40 | External closing pair is A29-T32 |
| Stack | -2.40 | External closing pair is G30-C31 |
| Stack | -1.40 | External closing pair is C31-G30 |
| Helix | -5.20 | 4 base pairs |
| External loop | +1.55 | Closing pair is T32-A29 |
ΔG = -4.4 kcal/mol ΔH = -31.6 kcal/mol ΔS = -91.1 e.u. Tm = -22.2°C
| Structural element | δδG | Information |
|---|---|---|
| External loop | -0.71 | 21 ss bases & 1 closing helices |
| Stack | -1.40 | External closing pair is A18-T31 |
| Stack | -1.58 | External closing pair is G19-C30 |
| Stack | -1.59 | External closing pair is T20-A29 |
| Helix | -4.57 | 4 base pairs |
| External loop | +0.85 | Closing pair is G21-C28 |
ΔG = -3.7 kcal/mol ΔH = -24.2 kcal/mol ΔS = -68.8 e.u. Tm = -39.6°C
| Structural element | δδG | Information |
|---|---|---|
| External loop | -1.59 | 47 ss bases & 1 closing helices |
| Stack | -2.40 | External closing pair is G30-C17 |
| Stack | -1.40 | External closing pair is C31-G16 |
| Helix | -3.80 | 3 base pairs |
| External loop | +1.71 | Closing pair is T32-A15 |
ΔG = -8.1 kcal/mol ΔH = -72.7 kcal/mol ΔS = -216.7 e.u. Tm = 15.9°C
| Structural element | δδG | Information |
|---|---|---|
| External loop | -0.63 | 18 ss bases & 1 closing helices |
| Stack | -1.58 | External closing pair is G19-C35 |
| Stack | -1.59 | External closing pair is T20-A34 |
| Stack | -1.58 | External closing pair is G21-C33 |
| Stack | -1.59 | External closing pair is T22-A32 |
| Stack | -0.61 | External closing pair is G23-C31 |
| Helix | -6.94 | 6 base pairs |
| Interior loop | +1.91 | External closing pair is T24-G30 |
| Stack | -1.40 | External closing pair is C27-G28 |
| Stack | -0.70 | External closing pair is T28-A27 |
| Stack | -1.40 | External closing pair is A29-T26 |
| Helix | -3.50 | 4 base pairs |
| External loop | +1.08 | Closing pair is G30-C25 |
ΔG = -5.8 kcal/mol ΔH = -42.8 kcal/mol ΔS = -124.2 e.u. Tm = -4.0°C
| Structural element | δδG | Information |
|---|---|---|
| External loop | -1.17 | 12 ss bases & 1 closing helices |
| Stack | -0.99 | External closing pair is A3-T25 |
| Stack | -1.14 | External closing pair is T4-A24 |
| Stack | -1.44 | External closing pair is T5-A23 |
| Stack | -1.95 | External closing pair is C6-G22 |
| Helix | -5.51 | 5 base pairs |
| External loop | +0.92 | Closing pair is C7-G21 |
ΔG = -4.8 kcal/mol ΔH = -47.8 kcal/mol ΔS = -144.1 e.u. Tm = -5.9°C
| Structural element | δδG | Information |
|---|---|---|
| External loop | -0.60 | 9 ss bases & 1 closing helices |
| Stack | -2.36 | External closing pair is C10-G35 |
| Stack | -0.61 | External closing pair is G11-C34 |
| Stack | +0.58 | External closing pair is T12-G33 |
| Stack | +0.10 | External closing pair is G13-T32 |
| Stack | -1.14 | External closing pair is T14-A31 |
| Stack | -0.70 | External closing pair is T15-A30 |
| Helix | -4.13 | 7 base pairs |
| Interior loop | +1.74 | External closing pair is A16-T29 |
| Stack | -1.40 | External closing pair is A18-T27 |
| Stack | -1.58 | External closing pair is G19-C26 |
| Helix | -2.98 | 3 base pairs |
| External loop | +1.13 | Closing pair is T20-A25 |