NAME
ct-ext — compute absorbance for structure(s) in .ct format
SYNOPSIS
ct-ext [OPTION]... [FILE]...
DESCRIPTION
ct-ext computes the UV absorbance of each structure in each FILE and writes it to standard output.
When no FILE is specified, or if FILE is -, ct-ext reads standard input.
OPTIONS
- -n, --NA=RNA2|RNA3|RNA|DNA
- set nucleic acid type to RNA or DNA. Default is RNA.
OBSCURE OPTIONS
- --single
- only sum extinctions for each nucelotide, rather than for each dinucleotide.
REFERENCES
Markham, N. R. and Zuker, M. (2008) UNAFold: software for nucleic acid folding and hybridization. In Keith, J. M., editor, Bioinformatics, Volume II. Structure, Functions and Applications, number 453 in Methods in Molecular Biology, chapter 1, pages 3-31. Humana Press, Totowa, NJ. ISBN 978-1-60327-428-9.
Other references which may be useful may be found at http://www.unafold.org/Dinamelt/dinamelt-references.php
SEE ALSO
ct-energy(1), hybrid-min(1), hybrid-ss-min(1)
AUTHORS
Nick Markham <markham@alum.rpi.edu> and Michael Zuker <zukerm@alum.mit.edu>
COPYRIGHT
Copyright (c) 2006-2021, Rensselaer Polytechnic Institute.
AVAILABILITY
Both commercial and non-commercial use of UNAFold require a license from RPI; see https://ipo.rpi.edu/invention/unafold-version-40.